View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_high_8 (Length: 270)
Name: NF2036_high_8
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 1133074 - 1133328
Alignment:
| Q |
16 |
ctaagtacctaataaatgcaatgcatgggggataattttcttatagaaggccaaaggaatgacccatatt-ctctattatattccttttctattcatttt |
114 |
Q |
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| T |
1133074 |
ctaactacctaatagatgcaatgcatgggagataattttcttatagaaggccaaaggaatgacccatgttgctctattatattccttttctattcatttt |
1133173 |
T |
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| Q |
115 |
ttaccatcttccttttcaatttgtcacttgtaaaacaagtgannnnnnnaatagtgtttcattgaaaatatataatagaaaagaagagagagattgctat |
214 |
Q |
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| T |
1133174 |
ttaccatattccttttcaatttgtcacttgtaaaacaagtgatttttttaatagtgtttgattgaaaatatataatagaaaagaagagagggattgctat |
1133273 |
T |
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| Q |
215 |
aattcattattttcttggttagnnnnnnnnaggagaagcatagggtaacctaattc |
270 |
Q |
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| T |
1133274 |
aattcattattttcttggttag-tttttttaggagaagcatagggtaacctaattc |
1133328 |
T |
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