View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_low_2 (Length: 607)
Name: NF2036_low_2
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 600
Target Start/End: Original strand, 41894631 - 41895215
Alignment:
| Q |
17 |
agtgtctttgttgctgtgaatatgtagaattttctgtcatctgatttgctctctctaaaagatgagatctgtaaaacaaaagcaaggtatatactgagta |
116 |
Q |
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| T |
41894631 |
agtgtctttgttgctgtgaatatgtagaattttctgtcatctgatttgctctctctaaaagatgagatctgtaaaacaaaagcaaggtatatactgagta |
41894730 |
T |
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| Q |
117 |
tatgatttattgacaagaaaaagtttattaatttattactttagagtaaattagtgaaacactgtagcaactataaatgaaaaactggagaagtagaaga |
216 |
Q |
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| T |
41894731 |
tatgatttattgacaagaaaaagtttattaatttattaatttagagtaaattagtgaaacactgtagcaactataaatgaaaaactggagaagtagaaga |
41894830 |
T |
|
| Q |
217 |
ttattgaacatgtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggatatcatgaaatgactctac |
316 |
Q |
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| T |
41894831 |
ttattgaacatgtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggatatcatgaaatgactctac |
41894930 |
T |
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| Q |
317 |
cattgtttgactagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaaagaagaatggnnnnnnn |
416 |
Q |
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| T |
41894931 |
cattgtttgactagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaaagaagaatggttttttt |
41895030 |
T |
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| Q |
417 |
aattttgaccttaaacagtatataagagca-cccatttgaactattttaaagnnnnnnnnctatattgacctggataatataccccaccaacaagatgga |
515 |
Q |
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| T |
41895031 |
aattttgaccttaaacagtatataagagcaccccatttgaattattttaaagaaaaaaaactatattgacctggataatataccccaccaacaagatgga |
41895130 |
T |
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| Q |
516 |
aagtcccacgtatatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaattccatatactcctatgctt |
600 |
Q |
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| T |
41895131 |
aagtcccacgtatatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaaatccatatactcctatgctt |
41895215 |
T |
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