View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2036_low_3 (Length: 574)
Name: NF2036_low_3
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2036_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 24401130 - 24400720
Alignment:
| Q |
11 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcaggatatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
110 |
Q |
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| T |
24401130 |
cagagaccggtgagactgagaatacaaacaaactcatttttattgttatcag-atatttaccaacttatgcttatttgctaaagtgcccttagttgctgg |
24401032 |
T |
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| Q |
111 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccactcacactacccttcctttgtttttcaacaaaacactcacttaccaatata |
210 |
Q |
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| T |
24401031 |
ttgttgatcacgtttattttacacacatgccataaggaaccaacaaccacttacactacccttcctttgtttttcaacaaatcactcacttaccaatata |
24400932 |
T |
|
| Q |
211 |
tatataataattgctagtaacacaagatggtacacacatatacatactctctcatttgcatttttctgcaatcctttcctctcctccaaatacacttgag |
310 |
Q |
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| T |
24400931 |
tatataataattgctagtaacacaagacggtacaaacatatacatactctctcatttgcatttttctgcaatccttttctctcctccaaatacac-tgag |
24400833 |
T |
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| Q |
311 |
tt-ctaggtttatg-ttcatgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaagaacatgtacgttaaacattggag |
408 |
Q |
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| T |
24400832 |
ttcctaggtttatgtttcctgtgttcattcagattcaagctgttttgtcatctgtggtatgattcataccggaaaagaacatgtacgtcaaacattggag |
24400733 |
T |
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| Q |
409 |
attttgtgtttat |
421 |
Q |
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| T |
24400732 |
gttttgtgtttat |
24400720 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 535
Target Start/End: Complemental strand, 8388451 - 8388379
Alignment:
| Q |
463 |
aggttatatatcggtttattattttgcaggtttcatacgaattgtcaacggaagatgttgatagagttgtatc |
535 |
Q |
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| T |
8388451 |
aggttatataacggtttattattttgcaagttatatatgagttgttaatggaagatgttgatagagttgtatc |
8388379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 534
Target Start/End: Original strand, 2353311 - 2353382
Alignment:
| Q |
463 |
aggttatatatcggtttattattttgcaggtttcatacgaattgtcaacggaagatgttgatagagttgtat |
534 |
Q |
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| T |
2353311 |
aggttatataacggtttattattttgcaggttacatatgagttgttggtggagaatgttgatagagttgtat |
2353382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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