View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2036_low_4 (Length: 482)

Name: NF2036_low_4
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2036_low_4
NF2036_low_4
[»] chr4 (11 HSPs)
chr4 (196-394)||(5141636-5141833)
chr4 (16-95)||(5178800-5178879)
chr4 (20-95)||(5141461-5141536)
chr4 (332-394)||(5178968-5179030)
chr4 (331-394)||(5193539-5193602)
chr4 (331-394)||(4845683-4845746)
chr4 (24-72)||(4846282-4846330)
chr4 (331-389)||(5154447-5154505)
chr4 (331-377)||(5170953-5170999)
chr4 (31-72)||(5192955-5192996)
chr4 (273-305)||(51714405-51714437)
[»] scaffold0011 (1 HSPs)
scaffold0011 (257-302)||(230335-230380)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 196 - 394
Target Start/End: Original strand, 5141636 - 5141833
Alignment:
Q  196 gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5141636 gtgcaatctcatatattaattaatactatgaaagagtttttaattgtaccatgattttaatccacttgggatggtttggtggtgttgacttaagactttg 5141735  T
Q  296 gagtatgctctttagcttcatnnnnnnnnntgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 394  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  5141736 gagtatgctctttagcttcat-aaaaaaaatgacaattttatacattctttaattttaggatcgaactctgtaattttttaggccaattaaatgattaa 5141833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5178800 - 5178879
Alignment:
Q  16 caagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 95  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178800 caagaacaatattcaaggttggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 5178879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 5141461 - 5141536
Alignment:
Q  20 aaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaacaaatttatac 95  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5141461 aaccatattcaaggctggattggcaacgaaggtactactttggtccctatataagagttctttaacaaatttatac 5141536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 5178968 - 5179030
Alignment:
Q  332 ttttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 394  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5178968 ttttatacattctttaattttaggatcgagctctgtaattttttaggccaattgagtgattaa 5179030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 5193539 - 5193602
Alignment:
Q  331 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 394  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  5193539 attttataaattctttaattttaggatcgagctctgtaattttttaggccaattgagggattaa 5193602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 4845746 - 4845683
Alignment:
Q  331 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtgattaa 394  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  4845746 attttataaattctttaattttaggatcgagctctgtaatttttttggccaattgagtaattaa 4845683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 4846330 - 4846282
Alignment:
Q  24 atattcaaggctggattgacaacgaaggtactactttggtccttatata 72  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  4846330 atattcaaggctggattggcaacgaaggtactatgttggtccttatata 4846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 5154447 - 5154505
Alignment:
Q  331 attttatacattctttaattttaggatcgaactctgtaattttttaggccaattgagtg 389  Q
    |||| ||| |||||||||||||||||||||  | ||||||||||||| | |||||||||    
T  5154447 atttcataaattctttaattttaggatcgacttatgtaattttttagacaaattgagtg 5154505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 5170953 - 5170999
Alignment:
Q  331 attttatacattctttaattttaggatcgaactctgtaattttttag 377  Q
    |||| ||| ||||||||||||||||||||| || |||||||||||||    
T  5170953 atttcataaattctttaattttaggatcgacctatgtaattttttag 5170999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 5192955 - 5192996
Alignment:
Q  31 aggctggattgacaacgaaggtactactttggtccttatata 72  Q
    ||||||||||| ||||||||||||||| || |||||||||||    
T  5192955 aggctggattggcaacgaaggtactacgttcgtccttatata 5192996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 51714437 - 51714405
Alignment:
Q  273 ggtggtgttgacttaagactttggagtatgctc 305  Q
    |||||||||||||| ||||||||||||||||||    
T  51714437 ggtggtgttgactttagactttggagtatgctc 51714405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 230335 - 230380
Alignment:
Q  257 ccacttgggatggtttggtggtgttgacttaagactttggagtatg 302  Q
    ||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  230335 ccacttgggctggcttggtggtgttgacttgagactttgaagtatg 230380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University