View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2036_low_9 (Length: 327)

Name: NF2036_low_9
Description: NF2036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2036_low_9
NF2036_low_9
[»] chr4 (3 HSPs)
chr4 (18-305)||(52749417-52749699)
chr4 (18-281)||(52492808-52493075)
chr4 (226-306)||(55864820-55864900)
[»] chr1 (2 HSPs)
chr1 (180-261)||(41133860-41133941)
chr1 (229-300)||(51988411-51988482)
[»] chr7 (9 HSPs)
chr7 (237-305)||(4984833-4984900)
chr7 (237-306)||(4985350-4985419)
chr7 (237-306)||(4989448-4989517)
chr7 (240-274)||(6730220-6730254)
chr7 (237-306)||(45887302-45887371)
chr7 (237-306)||(45887936-45888005)
chr7 (237-306)||(47331909-47331978)
chr7 (237-313)||(46757333-46757409)
chr7 (237-313)||(48259262-48259338)
[»] chr3 (2 HSPs)
chr3 (267-319)||(51377390-51377442)
chr3 (250-319)||(8327153-8327221)
[»] chr5 (5 HSPs)
chr5 (269-319)||(461196-461246)
chr5 (234-306)||(25993521-25993593)
chr5 (221-300)||(4820484-4820563)
chr5 (237-306)||(2319289-2319358)
chr5 (234-306)||(25992763-25992836)
[»] chr6 (1 HSPs)
chr6 (237-302)||(29997673-29997737)
[»] scaffold0136 (1 HSPs)
scaffold0136 (226-302)||(20676-20751)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 52749417 - 52749699
Alignment:
Q  18 aatggtgattgtgagttgagcaagacaagaaaaaatgaactttcttggatttagtggnnnnnnntcaannnnnnnnaacaaaaatttcagtctttgaaca 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||        ||||||||||||||||||||||||    
T  52749417 aatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagtggaaaaaaatcaattttttttaacaaaaatttcagtctttgaaca 52749516  T
Q  118 ccagagaaatggatacgaaggtgcttggtagaatgttctcagaatggttaagtaagattgttgcaagtggtgggtgagagaggcatgaaggagtgnnnnn 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||     ||||         
T  52749517 ccagagaaatggatacgaaggtgcttggtagaatgttctcagaatggttaagtaagattgctacaagtggtgggtgagagaagcat-----agtgaaaaa 52749611  T
Q  218 nnntcttgtattgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaacta 305  Q
       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  52749612 aaatcttgtattgagtgtccatgataaaattatgttctttagttgattcaatggtcagaaaaaagctttcccataatgggaaaaacta 52749699  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 52492808 - 52493075
Alignment:
Q  18 aatggtgattgtgagttgagcaagacaagaaaaaatgaactttcttggatttagtggnnnnnnntcaannnnnnnnaacaaaaatttcagtctttgaaca 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||        ||||||||||||||||||||||||    
T  52492808 aatggtgattgtgagttgagcaagacaagcaaaaatgaactttcttggatttagtg-caaaaaatcaattttttttaacaaaaatttcagtctttgaaca 52492906  T
Q  118 ccagagaaatggatacgaaggtgcttggtagaatgttctcagaatggttaagtaagattgttgcaag---tggtgggtgagagaggcatgaaggagtg-- 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||   || |||||||||||||||||| ||||||      
T  52492907 ccagagaaatggatacgaaggtgcttggtagaatgttctcataatggttaagtgagattgctgcaagtgttgatgggtgagagaggcatgacggagtgaa 52493006  T
Q  213 nnnnnnnntcttgtattgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaa 281  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52493007 aaaaaaaatcttgtattgagtgtccatgataaaattatgttctttagttgatccaatggtcaaaaaaaa 52493075  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 55864820 - 55864900
Alignment:
Q  226 tattgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    ||||||| || |||||||||  | | ||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||    
T  55864820 tattgagagttcatgataaagatgtattctttattagatccaatggtcag-aaaaagcttttccatggtgggaaaaaactag 55864900  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 41133941 - 41133860
Alignment:
Q  180 gcaagtggtgggtgagagaggcatgaaggagtgnnnnnnnntcttgtattgagtgtccatgataaaattatgttctttagtt 261  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  41133941 gcaagtggtgggtgagagaggcatgaaggagtgaaaaaaaatcttgtattgagtgtccatgataaaattatgttctttagtt 41133860  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 51988411 - 51988482
Alignment:
Q  229 tgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaa 300  Q
    |||||||| ||||||| |||||| ||| || |||||| |||||||| |||||  |||| |||||||||||||    
T  51988411 tgagtgtctatgataatattatgatctatatttgatctaatggtcaaaaaaatactttcccatggtggaaaa 51988482  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 4984900 - 4984833
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaacta 305  Q
    |||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||    
T  4984900 catgataaagatgtgttctttattagatccaatggtcagaaaaa-gcttttccatggtggaaaaaacta 4984833  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 4985350 - 4985419
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  4985350 catgataaagatgtgttctttattagatccaatggtcag-aaaaagctttcccatggtgggaaaaaactag 4985419  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 4989448 - 4989517
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  4989448 catgataaagatgtgttctttattagatccaatggtcag-aaaaagctttcccatggtgggaaaaaactag 4989517  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 6730220 - 6730254
Alignment:
Q  240 gataaaattatgttctttagttgatccaatggtca 274  Q
    ||||||| |||||||||||||||||||||||||||    
T  6730220 gataaaaatatgttctttagttgatccaatggtca 6730254  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 45887371 - 45887302
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | ||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  45887371 catgataaagatgtgttctttattagatccaatggtca-aaaaaagctttcccatggtgggaaaaaactag 45887302  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 45887936 - 45888005
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  45887936 catgataaagatgtgttctttattagatccaatggtcag-aaaaagctttcccatggtgggaaaaaactag 45888005  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 47331909 - 47331978
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  47331909 catgataaagatgtgttctttattagatccaatggtcag-aaaaagctttcccatggtgggaaaaaactag 47331978  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 46757333 - 46757409
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactagtgtttcc 313  Q
    |||||||||  | ||||||||| | |||||||||||||| |||||||||| ||||||| || |||||||||| |||||    
T  46757333 catgataaagatgtgttctttattagatccaatggtcag-aaaaagctttcccatggtggggaaaaactagtctttcc 46757409  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 48259338 - 48259262
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactagtgtttcc 313  Q
    |||||||||  | ||||||||| | ||||||||||||||| ||||||||| | ||||| ||||||||||||| |||||    
T  48259338 catgataaagatgtgttctttattagatccaatggtcaga-aaaagctttcctatggtgggaaaaaactagtctttcc 48259262  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 51377442 - 51377390
Alignment:
Q  267 aatggtcagaaaaaagcttttccatggtggaaaaaactagtgtttcctatgct 319  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||| |||||    
T  51377442 aatggtcagaaaaaagcttttccatggtagaaaaaactagcatttcccatgct 51377390  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 8327153 - 8327221
Alignment:
Q  250 tgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaactagtgtttcctatgct 319  Q
    ||||||||| |  ||| ||||||||||||||| |||| ||||||||||||||| |||| ||||| |||||    
T  8327153 tgttctttactaaatctaatggtcagaaaaaa-ctttcccatggtggaaaaaattagtctttcccatgct 8327221  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 461246 - 461196
Alignment:
Q  269 tggtcagaaaaaagcttttccatggtggaaaaaactagtgtttcctatgct 319  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| |||||    
T  461246 tggtcagaaaaaagctttttcatggtggaaaaaactagcctttcccatgct 461196  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 25993521 - 25993593
Alignment:
Q  234 gtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaactag 306  Q
    ||||||||||||  | ||||||| | | |||| ||||||||||||| |||||| ||||||||| |||||||||    
T  25993521 gtccatgataaagatgtgttcttcactagatctaatggtcagaaaagagctttcccatggtgggaaaaactag 25993593  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 4820563 - 4820484
Alignment:
Q  221 tcttgtattgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaa 300  Q
    |||||| ||||||||||||||||||||||||||  ||| |  ||| ||||| || ||||||  ||| |||||||||||||    
T  4820563 tcttgtgttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaaaatttcccatggtggaaaa 4820484  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 2319358 - 2319289
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggt-ggaaaaaactag 306  Q
    |||||||||  | ||||||||| | ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  2319358 catgataaagatgtgttctttattagatccaatggtcaga-aaaagctttcccatggtgggaaaaaactag 2319289  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 25992836 - 25992763
Alignment:
Q  234 gtccatgataaaattatgttctttagttgatccaatggtcagaaaaaa-gcttttccatggtggaaaaaactag 306  Q
    |||| |||||||  ||||||||| | | |||| ||||||||||||||| ||||| ||||||||| |||||||||    
T  25992836 gtccgtgataaagatatgttcttcactagatctaatggtcagaaaaaaagctttcccatggtgggaaaaactag 25992763  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 29997737 - 29997673
Alignment:
Q  237 catgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaa 302  Q
    |||||||||  | ||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||    
T  29997737 catgataaagatgtgttctttattagattcaatggtcagaaaaa-gctttcccatggtggaaaaaa 29997673  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 20751 - 20676
Alignment:
Q  226 tattgagtgtccatgataaaattatgttctttagttgatccaatggtcagaaaaaagcttttccatggtggaaaaaa 302  Q
    ||||||| |||||| |||||  | ||||||  | ||||||||||||||||| |||| |||| |||||||||||||||    
T  20751 tattgagagtccataataaagatgtgttctacacttgatccaatggtcaga-aaaatctttcccatggtggaaaaaa 20676  T

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