View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20370_high_3 (Length: 307)
Name: NF20370_high_3
Description: NF20370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20370_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 9166513 - 9166215
Alignment:
| Q |
12 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
111 |
Q |
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| T |
9166513 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
9166414 |
T |
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| Q |
112 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
199 |
Q |
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| T |
9166413 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtaaaaaaactggtgatgatgatgatgaaggtccttcctctgataaaggagaggaagatg |
9166314 |
T |
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| Q |
200 |
aagatgaggaagtagataagaagaacagacatggactgaatnnnnnnngtggctatgatgacgatgaaggtccaaggggaggggaccttg-tgatgatg |
297 |
Q |
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| T |
9166313 |
aagatgaggaagtagataagaagaatagacatggactgaataaaaaaagtggctatgatgacgatgaaggtccaaggggaggggaccttgatgatgatg |
9166215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 9155096 - 9154867
Alignment:
| Q |
12 |
agagaagatgaataataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaag |
111 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
9155096 |
agagaagatgaaaaataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcctgctgcatttggtgaacatgggaag |
9154997 |
T |
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| Q |
112 |
ttagatgacaaagaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatg |
199 |
Q |
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| T |
9154996 |
ttagatgacaaggagagcaacgcagggggtgggagaggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaagatg |
9154897 |
T |
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| Q |
200 |
aagatgaggaagtagataagaagaacagac |
229 |
Q |
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| T |
9154896 |
aagacgaggaagtagataggaagaaaagac |
9154867 |
T |
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