View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20370_low_7 (Length: 213)

Name: NF20370_low_7
Description: NF20370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20370_low_7
NF20370_low_7
[»] chr1 (11 HSPs)
chr1 (1-204)||(15035367-15035570)
chr1 (1-204)||(14502041-14502244)
chr1 (12-188)||(14534539-14534715)
chr1 (1-95)||(15015894-15015988)
chr1 (1-95)||(14465937-14466031)
chr1 (12-187)||(15000899-15001074)
chr1 (44-204)||(14524546-14524706)
chr1 (1-95)||(15009491-15009585)
chr1 (1-95)||(15030589-15030683)
chr1 (1-89)||(15023608-15023696)
chr1 (12-189)||(14480855-14481032)
[»] scaffold0400 (2 HSPs)
scaffold0400 (44-204)||(10881-11041)
scaffold0400 (5-204)||(5346-5545)
[»] scaffold0365 (2 HSPs)
scaffold0365 (44-204)||(11524-11684)
scaffold0365 (5-204)||(5990-6189)
[»] chr7 (3 HSPs)
chr7 (27-94)||(16023082-16023149)
chr7 (27-94)||(16101174-16101241)
chr7 (27-94)||(16170852-16170919)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 15035367 - 15035570
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||    
T  15035367 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccgaaattgaa 15035466  T
Q  101 aagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactc 200  Q
    |||||||||||||||  ||||||||||||||||||| || ||| || ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  15035467 aagtttagttttaagcagcaactccttctacggtgtagttccacaccatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactc 15035566  T
Q  201 tctg 204  Q
    ||||    
T  15035567 tctg 15035570  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 14502041 - 14502244
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaa 100  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |       
T  14502041 gtgataatgattcaaaatccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccg 14502140  T
Q  101 aagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactc 200  Q
     |  ||||||||||    |||||| ||||| || | ||| ||| || ||||||| |||||||| || ||||| ||||||||||||||||||||| | |||    
T  14502141 caccttagttttaaaaaacaactcattctatggagctgttccacaccatattggagtgatgtcaaacctagacactcttgatttgtcactaaataatctc 14502240  T
Q  201 tctg 204  Q
    ||||    
T  14502241 tctg 14502244  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 14534715 - 14534539
Alignment:
Q  12 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 111  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  | | ||||||||    
T  14534715 tcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttctcatcacttacaaaaatccacactttagttt 14534616  T
Q  112 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtca 188  Q
    |||    ||||| ||| ||||| ||||| ||| || ||||||| | |||||| | |||| |||||||||||||||||    
T  14534615 taacaaacaacttcttgtacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttgtca 14534539  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15015894 - 15015988
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 95  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  15015894 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaa 15015988  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14465937 - 14466031
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 95  Q
    |||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  14465937 gtgatgatgaatcaaaatcaatctacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccaaaa 14466031  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 15000899 - 15001074
Alignment:
Q  12 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 111  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |  | |  |||||||    
T  15000899 tcaaaatccatcaacatgataaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttacaaaaatccacaccttagttt 15000998  T
Q  112 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtc 187  Q
    |||    ||||| |||  |||| ||||| ||| || ||||||| | |||||| | |||| ||||||||||||||||    
T  15000999 taacaaacaacttcttgcacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttgtc 15001074  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 14524706 - 14524546
Alignment:
Q  44 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 143  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||| || ||||| |||    
T  14524706 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttcca 14524607  T
Q  144 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 204  Q
     || |||||||  | |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  14524606 caccatattggtctaatgtgcaatctagacactcttgatttgtcactaaataaactctctg 14524546  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15009491 - 15009585
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 95  Q
    ||||| |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||||| |||||    
T  15009491 gtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa 15009585  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15030589 - 15030683
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa 95  Q
    ||||| |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| || |||||||||||| |||||    
T  15030589 gtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa 15030683  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15023608 - 15023696
Alignment:
Q  1 gtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactt 89  Q
    ||||| |||| || || |||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||| |||||||||||||||    
T  15023608 gtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggattaaacggtactcttcaaagtctcaatttctcatcactt 15023696  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 14480855 - 14481032
Alignment:
Q  12 tcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttt 111  Q
    |||||||| || |||||| || ||||||||  | ||| |||||||||||| ||||||||||| ||||||||||||||| ||||| |  |||  |||||||    
T  14480855 tcaaaatctattaacaagatagatctcaccagttttgaactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttt 14480954  T
Q  112 taagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcac 189  Q
    | ||   ||||| |||||| || ||| | ||| || ||||||| || |||||||||||  | ||||||||||| ||||    
T  14480955 tgagaaacaacttcttctatggagttattccataccatattggtgtaatgtccaatctgaacactcttgatttttcac 14481032  T

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Target: scaffold0400 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 10881 - 11041
Alignment:
Q  44 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 143  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  10881 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 10980  T
Q  144 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 204  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  10981 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 11041  T

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Target: scaffold0400; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 5346 - 5545
Alignment:
Q  5 tgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagt 104  Q
    |||||| |||||||| |||  |||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |      
T  5346 tgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatc 5445  T
Q  105 ttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 204  Q
    ||||||||||    ||| ||||| ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||    
T  5446 ttagttttaaaaaacaattccttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg 5545  T

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Target: scaffold0365 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 11524 - 11684
Alignment:
Q  44 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 143  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  11524 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 11623  T
Q  144 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 204  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  11624 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 11684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 5990 - 6189
Alignment:
Q  5 tgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagt 104  Q
    |||||| |||||||| |||  |||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |      
T  5990 tgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatc 6089  T
Q  105 ttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg 204  Q
    ||||||||||    ||| ||||| ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||    
T  6090 ttagttttaaaaaacaattccttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg 6189  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 16023082 - 16023149
Alignment:
Q  27 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 94  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16023082 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16023149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 16101174 - 16101241
Alignment:
Q  27 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 94  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16101174 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16101241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 16170852 - 16170919
Alignment:
Q  27 aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 94  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16170852 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16170919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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