View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20371_high_3 (Length: 582)
Name: NF20371_high_3
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 537
Target Start/End: Complemental strand, 1793550 - 1793027
Alignment:
| Q |
10 |
attattctgtccaatttgtagtgaacaattatcatatcatatcatcatatcatagtttttatttggataccttctgctcaaacttttcgagcgtcaagtt |
109 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
1793550 |
attactctgtccaatttgtagtgaacaaatatcatatcatattatcatatcgtagttttcatttggataccttctgctcaaacttttcgagtgtcaagtt |
1793451 |
T |
|
| Q |
110 |
taatcacttgatcaaaagcttaaaaagggattaagggtatttttgtcaacttatggagtagctgaaagtttatagggtgtagctagaaaaaatcgaatat |
209 |
Q |
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||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
1793450 |
taatcacttgatcgaaagtttaaaaagggactaagggtattttcgtcaacttatggagtagctgaacgtttatagggtgtagctaaaaaaaatcgaatac |
1793351 |
T |
|
| Q |
210 |
tattcctctattcattttagttatcgttttaatgctattatttgtaaaaaccagaatgcgcatatcatccatacacaactacaaattaacttctctaagc |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| |||| |
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| T |
1793350 |
tattcctctatccattttagttatcgttttaatgctattatttgtaaaaatcagaatgcgcatatcctccacgcacaactgcaaattaacttctcaaagc |
1793251 |
T |
|
| Q |
310 |
aagtagggctaccgtggacgacaaaacgattgagattaatcactccctttgatgcataaggttttgtgctaagttattttcagtattattatgcttttgt |
409 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1793250 |
tagtagggctaccatggacgacaaaacgattgagattaatcactccctttgatgcataaggttttgtgctaagtcattttcagtattattatgctttta- |
1793152 |
T |
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| Q |
410 |
ttggtcttcaaataggtggctaagtttgagctaccttagagttggatattaatgcaaatagaacgactagtataaaaccaagtgaaaacctccaaacaac |
509 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1793151 |
---gtcttcaaataggtggctaagtttgagctactttagagttggatattaatgcaaatagaacgactagtataaaaccaagtgaaaaactccaaacaac |
1793055 |
T |
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| Q |
510 |
aaaaaggatatgaagatcatcgaacaac |
537 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1793054 |
aaaaaggatatgaagatcatcgaacaac |
1793027 |
T |
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