View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20371_high_4 (Length: 544)
Name: NF20371_high_4
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_high_4 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 22)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 31 - 535
Target Start/End: Complemental strand, 21772553 - 21772049
Alignment:
| Q |
31 |
ctccttttccttttctttttggaaccatgttcttcttcttctctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgct |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772553 |
ctccttctccttttctttttggaaccatgtccttcttcttccctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgct |
21772454 |
T |
|
| Q |
131 |
ttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaacc |
230 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772453 |
ttctatcaagccactctcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaacc |
21772354 |
T |
|
| Q |
231 |
agttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772353 |
agttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgaca |
21772254 |
T |
|
| Q |
331 |
acttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772253 |
acttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaat |
21772154 |
T |
|
| Q |
431 |
ctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatataagatttgtgttctga |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
21772153 |
ctttttgtgtagatcctctggaatgtatccgttattttctatgtattttgctgcccacataagtttgtacttctctgctaatatcagatttgtgttatga |
21772054 |
T |
|
| Q |
531 |
tgatg |
535 |
Q |
| |
|
||||| |
|
|
| T |
21772053 |
tgatg |
21772049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 74 - 535
Target Start/End: Complemental strand, 21726445 - 21725984
Alignment:
| Q |
74 |
tgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttg |
173 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
21726445 |
tgactgggactcatctggtgtggcccaatgatgaccgtcgacgaaattcatcatgctttctatcaatccactctcgtcttcatctgtccacaatagcttg |
21726346 |
T |
|
| Q |
174 |
agtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
21726345 |
agtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccctaatattcatgtgccatggtttattaagat |
21726246 |
T |
|
| Q |
274 |
tcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21726245 |
ccgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggt |
21726146 |
T |
|
| Q |
374 |
tgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatg |
473 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
21726145 |
tgaagctaaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtgtccggtgttttctatg |
21726046 |
T |
|
| Q |
474 |
tattttgctgcccacataagtttgtacttctctgctaatataagatttgtgttctgatgatg |
535 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
21726045 |
tattttgctgcccacataagtttgtactactctgctaatatcagatttgtgttctgatgatg |
21725984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 21714787 - 21714300
Alignment:
| Q |
19 |
ataaactatgctctccttttccttttctttttggaaccatgttcttcttcttctctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaa |
118 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21714787 |
ataaactatgctctctttctgcttttctttttggaaccatgtccttcttcttctctgactgtgactcatctggtgtggcccaatgatgacaggcgaggaa |
21714688 |
T |
|
| Q |
119 |
attcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatc |
218 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714687 |
attcatcatgctttttatcaatccactctggtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatc |
21714588 |
T |
|
| Q |
219 |
atcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaaca |
318 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||| |||| |||||||| ||| || ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21714587 |
attacaagaacaagttgatcaaccttgatattcatttgccctggttcatcaagcttggctctctccaagatatgaagcaaagaacatccatccacgaaca |
21714488 |
T |
|
| Q |
319 |
acatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaat |
418 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
21714487 |
acatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggttgaagctaaaacatcgttgtcaaaatgacccttcagttcatcaat |
21714388 |
T |
|
| Q |
419 |
gttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctct |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21714387 |
gttatctgcaatctttttgtgtagatcctctggaatgtgtctggtgttttctatgtattttgctgcccacataagtttgtacttctct |
21714300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 23 - 511
Target Start/End: Complemental strand, 21788826 - 21788341
Alignment:
| Q |
23 |
actatgctctccttttccttttctttttggaaccatgttcttcttcttctctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattc |
122 |
Q |
| |
|
|||||| ||||||| ||| |||| |||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21788826 |
actatgttctccttctccctttccttttggaaccatgtccttctccttatctggctgtgactcatctggtgtggcccaatgatgacagtcgaggaaagtc |
21788727 |
T |
|
| Q |
123 |
atcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatca |
222 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21788726 |
atcatgctttttatcaattcactatcgtt---atctttccacaatagcttgagtactacgtaaggaagttgattctccaacagaagcacatccatcatca |
21788630 |
T |
|
| Q |
223 |
caagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacat |
322 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||| || |||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21788629 |
caagaaccagttgatcaactttaatattcatgtgcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacat |
21788530 |
T |
|
| Q |
323 |
ccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgtta |
422 |
Q |
| |
|
|||||||| ||||||||| ||||| | ||||||| |||||||| | ||| ||| ||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
21788529 |
ccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagttaaagttaaaacatcgtcgccaaaatgacccttcagttcatcaatgtta |
21788430 |
T |
|
| Q |
423 |
tcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
21788429 |
tctgcaatctttttgtgcagatcctctggaatgtgtccagtgttttcgatgtattttgctgcccacataagcttgtacttctctcctaa |
21788341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 86 - 511
Target Start/End: Complemental strand, 21682187 - 21681762
Alignment:
| Q |
86 |
atctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataa |
185 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| ||| ||||||| |||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
21682187 |
atctagtgtggcccaatgatgacagtcgaggaaattcgtcataatttttatcaattcactctcattgctatctttccacaatagcttgagtacttgataa |
21682088 |
T |
|
| Q |
186 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctcca |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | | |||||||| |
|
|
| T |
21682087 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaacattcatgtgccctggttcataaagcatggttttctcca |
21681988 |
T |
|
| Q |
286 |
agatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaac |
385 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||| |||||||| | |||| ||| |||||| |
|
|
| T |
21681987 |
agatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccggttaaagttaaaac |
21681888 |
T |
|
| Q |
386 |
atcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcc |
485 |
Q |
| |
|
||| ||| |||||| ||||||| ||||||||||||||||||||| ||||||| |||||||| | ||||| ||| |||||| ||||||||||||||| |
|
|
| T |
21681887 |
atcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttgatgtattttgctgcc |
21681788 |
T |
|
| Q |
486 |
cacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
|||||||| |||||||||||| |||| |
|
|
| T |
21681787 |
cacataagcttgtacttctctcctaa |
21681762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 86 - 506
Target Start/End: Complemental strand, 21785943 - 21785523
Alignment:
| Q |
86 |
atctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataa |
185 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||||| ||||||| |||| ||||| ||||||||||||||| ||||| |||| |||| |
|
|
| T |
21785943 |
atctggtgtggcccaatgatgacatttgaggaaattcttcatgctttttatcaattcactctcgtcgctatctttccacaatagtttgaggacttcataa |
21785844 |
T |
|
| Q |
186 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctcca |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||| || |||||||||| |
|
|
| T |
21785843 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatttgccctggtacatgaagcttggctttctcca |
21785744 |
T |
|
| Q |
286 |
agatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaac |
385 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| || |||||||| | |||| ||| |||||| |
|
|
| T |
21785743 |
agatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggttaaagttaaaac |
21785644 |
T |
|
| Q |
386 |
atcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcc |
485 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| || || | || || | ||||||||| ||| |
|
|
| T |
21785643 |
atcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatcgcgtggattgcggcctatattctcgaggtattttgcggcc |
21785544 |
T |
|
| Q |
486 |
cacataagtttgtacttctct |
506 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
21785543 |
cacataagcttgtacttctct |
21785523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 86 - 511
Target Start/End: Complemental strand, 21623730 - 21623305
Alignment:
| Q |
86 |
atctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataa |
185 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||||| | ||||||| || | |||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
21623730 |
atctggtgtggcccaaagatgacagccgaggaaatttttcatggtcattatcaattcattctcgttgttatctttccacaatagcttgagtacttcataa |
21623631 |
T |
|
| Q |
186 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctcca |
285 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |||||||||||| | ||||||||| |||||||||||| |||| |||||||| ||| || ||| | |||| |
|
|
| T |
21623630 |
ggcagttgattctccaacaaaaccacatcaatcatcacaagattccgttgatcaagcttaatattcatctgccctggttcatgaagcttggctgtatcca |
21623531 |
T |
|
| Q |
286 |
agatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaac |
385 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||| |||||||| || |||| ||| |||||| |
|
|
| T |
21623530 |
tgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggttaaagttaaaac |
21623431 |
T |
|
| Q |
386 |
atcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcc |
485 |
Q |
| |
|
||| || |||||||||||||||||||||||| |||||||||||||| ||||| | ||||| ||| | || | |||||| ||||||||||||||| |
|
|
| T |
21623430 |
atcgtcactaaaatgacccttcagttcatcaatattatcagcaatcttgttgtgcatatccttctgaacttttctggtgtttttgatgtattttgctgcc |
21623331 |
T |
|
| Q |
486 |
cacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
|||||||| |||||||||||| |||| |
|
|
| T |
21623330 |
cacataagcttgtacttctctcctaa |
21623305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 155 - 506
Target Start/End: Complemental strand, 21628596 - 21628242
Alignment:
| Q |
155 |
atctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatg |
254 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
21628596 |
atctttccacaatagcttgagtacttcataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaagcttaatatccata |
21628497 |
T |
|
| Q |
255 |
tgccatggttcattaagattcg---ctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaa |
351 |
Q |
| |
|
||| ||| ||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
21628496 |
ggccttgggtcattaaacaacgtaactttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggcatccaa |
21628397 |
T |
|
| Q |
352 |
agcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctgg |
451 |
Q |
| |
|
||||| |||||| || ||| || ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21628396 |
agccttgaagagagtttcccgttaaatttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaatctttttgtgtagttcctctgg |
21628297 |
T |
|
| Q |
452 |
aatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctct |
506 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
21628296 |
aataagtccaatgttttctatgtattttgatgcccacacaagcttgtacttctct |
21628242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 156 - 506
Target Start/End: Complemental strand, 21652527 - 21652186
Alignment:
| Q |
156 |
tctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgt |
255 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21652527 |
tctttccacaaaagcttgagtacttgataaggaagttgattttccaacaaaagcacatccatcatca---------gttgatcaaccttaatattcatgt |
21652437 |
T |
|
| Q |
256 |
gccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcc |
355 |
Q |
| |
|
||| || ||||| || || |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21652436 |
gccctgcttcatcaacgttggctttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagcc |
21652337 |
T |
|
| Q |
356 |
tgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatg |
455 |
Q |
| |
|
| |||||||| | ||| ||| ||||||||| ||| |||||||||||| ||||| | ||| ||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
21652336 |
ttcaagagacttgccagttaaagttaaaacatcgtcgctaaaatgaccctttagttcgttaattttatcggcaatctttttgtgtcgatcctctagaata |
21652237 |
T |
|
| Q |
456 |
tatccgttgttttctatgtattttgctgcccacataagtttgtacttctct |
506 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
21652236 |
aagccgttgttttctatgtattttgctgcccacataagcttatactcctct |
21652186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 116 - 503
Target Start/End: Complemental strand, 21664614 - 21664218
Alignment:
| Q |
116 |
gaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatcc |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21664614 |
gaaattcatgatgctttctatcaatccactcttgtcttcatctttccacaatagcttgagtacttgataaggtagttgattctccaacaaaagcacatcc |
21664515 |
T |
|
| Q |
216 |
atcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcg-----ctttc-tccaagatatacagcaaagaacatccat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||| |||| | || | | | ||||||||||| |||||||| ||||||| |
|
|
| T |
21664514 |
atcatcacaagaaccagttgatcaaccttaatatccataggctctgggtcatccatccacgtacaacatccatccaagatataaagcaaagagcatccat |
21664415 |
T |
|
| Q |
310 |
ccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaa---acatcatcgtcaaaatgaccctt |
406 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| | ||||||| |||||||| | |||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
21664414 |
ccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagttaaaattacatcatcgtcaaaatgaccctt |
21664315 |
T |
|
| Q |
407 |
cagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttc |
503 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| |||| || || | ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
21664314 |
cagttcatcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtattttcaatgtattttgctgcccacataagcttgtacttc |
21664218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 124 - 511
Target Start/End: Complemental strand, 21992681 - 21992294
Alignment:
| Q |
124 |
tcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcac |
223 |
Q |
| |
|
||||||||| ||||||| |||| || | | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21992681 |
tcatgctttttatcaattcactctcattgttatctttccacaatagcttgagtactacgtaaggaagttgattctccaacagaagcacatccatcatcac |
21992582 |
T |
|
| Q |
224 |
aagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatc |
323 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| ||| || |||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21992581 |
aagaaccagttgatcaactttaatattcatgtgcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacatc |
21992482 |
T |
|
| Q |
324 |
cacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttat |
423 |
Q |
| |
|
|| |||| ||||||||| ||||| | ||||||| |||||||| || | | ||| ||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
21992481 |
catgacagcttttcttcgaggcttccaaagccttcaagagactttccagctaaagttaaaacatcgtcactaaaatgacccttcagttcatcaatgttat |
21992382 |
T |
|
| Q |
424 |
cagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
| |||||||||||||||||| |||| | ||| ||||| |||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
21992381 |
cgataatctttttgtgtagatcgcatggattaagtcctgcattttcgatgtattttgctgcccacgtaagcttgtacttctctcctaa |
21992294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 158 - 511
Target Start/End: Complemental strand, 21764509 - 21764174
Alignment:
| Q |
158 |
tttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgc |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
21764509 |
tttccacaatagcttgagtacttcgtaaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgaccaaccttaatcttcatgtgc |
21764410 |
T |
|
| Q |
258 |
catggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctg |
357 |
Q |
| |
|
| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21764409 |
c------------------ctttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagcctt |
21764328 |
T |
|
| Q |
358 |
caagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgta |
457 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
21764327 |
caagagactttccagttaaagttaaaacatcatcgctaaaacgacccttcagttcatcgatgttatcagcaatcttttggtgtagttcctctggattaag |
21764228 |
T |
|
| Q |
458 |
tccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
| || ||||||||||||||| |||||||||| |||| |||||||||||| |||| |
|
|
| T |
21764227 |
tgcggtgttttctatgtattctgctgcccacttaagcttgtacttctctcctaa |
21764174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 86 - 506
Target Start/End: Complemental strand, 21647284 - 21646860
Alignment:
| Q |
86 |
atctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataa |
185 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||| ||||| | | ||||||| || | || | | ||||||| | ||||| ||||||||| ||| |
|
|
| T |
21647284 |
atctggtgtggtccaatgatgacatttgaggaaatttttcatggtatttatcaattcattctcattgttatctttcaataatagtttgagtactatgtaa |
21647185 |
T |
|
| Q |
186 |
ggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctcca |
285 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||| || |||||||| | |
|
|
| T |
21647184 |
gggagttgattctccaacaaaagcacatccatcatcacaagaaccagtttatcaaccttaatattcatctgccctggttcatgaagcttggctttctcta |
21647085 |
T |
|
| Q |
286 |
agatatacagcaaagaacatcc----atccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagcta |
381 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| | ||| ||| || |
|
|
| T |
21647084 |
agatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgccggtcaaagtta |
21646985 |
T |
|
| Q |
382 |
aaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgc |
481 |
Q |
| |
|
|||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||| ||||||||||| |
|
|
| T |
21646984 |
aaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaatctttttgtgtagatccttcttaattcttcccgtgtttttgatgtattttgc |
21646885 |
T |
|
| Q |
482 |
tgcccacataagtttgtacttctct |
506 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
21646884 |
tgcccacataagcttgtatttctct |
21646860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 106 - 511
Target Start/End: Original strand, 21807793 - 21808201
Alignment:
| Q |
106 |
gacagtcgaggaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaa |
205 |
Q |
| |
|
|||||| | |||||||| ||||| ||| ||||||| ||| || | | ||||| |||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
21807793 |
gacagttggggaaattcctcatgatttttatcaattcaccctcattgttatcttcccacaatagcttaagtactttataaggcagttgattctccaacaa |
21807892 |
T |
|
| Q |
206 |
aagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcg---ctttctccaagatatacagcaaagaa |
302 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||| |||||||| || |||| ||| |||| || | || ||||||||||||| |||||||| |
|
|
| T |
21807893 |
aagcacatccgttatcagaagaaccagttgatcaagcttaatatccacatgccctggctcatcaaaccacatgactgtctccaagatataaagcaaagag |
21807992 |
T |
|
| Q |
303 |
catccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgac |
402 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||| | |||| ||| ||||||||| ||| ||||||||| |
|
|
| T |
21807993 |
catccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagttaaaacatcgtcgccaaaatgac |
21808092 |
T |
|
| Q |
403 |
ccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtactt |
502 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||| || | ||||||||| |||||||| |
|
|
| T |
21808093 |
ccttcagttcatcgatgttatcagcaatctttttgtgtagatcctctagaataaagccgctgttttctatgtatttcgcagaccacataagcttgtactt |
21808192 |
T |
|
| Q |
503 |
ctctgctaa |
511 |
Q |
| |
|
|||| |||| |
|
|
| T |
21808193 |
ctctcctaa |
21808201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 48 - 511
Target Start/End: Complemental strand, 21689985 - 21689525
Alignment:
| Q |
48 |
tttggaaccatgttcttcttcttctctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaatccactgt |
147 |
Q |
| |
|
|||||||||| || |||| |||||||| |||||||| | ||||| ||||||| || |||| |||||||||||| || |||||| ||||||| |||| | |
|
|
| T |
21689985 |
tttggaaccacgtctttctccttctctggctgtgacttacctggtctggccca--ga-gacactcgaggaaattcgtcgtgctttttatcaattcactct |
21689889 |
T |
|
| Q |
148 |
cgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaat |
247 |
Q |
| |
|
|| | ||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||| | | ||||||||||||||||| |
|
|
| T |
21689888 |
tgttgttatctttccacaatagctcgagtacttcataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaat |
21689789 |
T |
|
| Q |
248 |
attcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggcta |
347 |
Q |
| |
|
|| ||| ||| ||||||| ||| | |||||||||||||||| |||||||| ||||||||||| |||||||||||||| | |||||||||||| ||| |
|
|
| T |
21689788 |
atccataggccctggttcaacaagcctgtctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagacta |
21689689 |
T |
|
| Q |
348 |
cgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagat-cc |
446 |
Q |
| |
|
||||||| | ||||| || ||| | | ||||||||| || ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| || |
|
|
| T |
21689688 |
tcaaagccttcgagagaatttccggtcaatgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccc |
21689589 |
T |
|
| Q |
447 |
tctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
||| ||||| ||| |||||| ||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
21689588 |
tct-gaatgcttccagtgtttttgatgtattttgctgcccacataagcttgtacttctctcctaa |
21689525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 124 - 511
Target Start/End: Complemental strand, 21705136 - 21704755
Alignment:
| Q |
124 |
tcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcac |
223 |
Q |
| |
|
||||||||| ||| |||||||| || ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
21705136 |
tcatgctttttattaatccactctcatcttcatctttccacaaaagcttgagtacttcataaggcagttgattctccaacaaaagcacatcctccctcac |
21705037 |
T |
|
| Q |
224 |
aagaaccagttgatcaaccttaatattcatgtgccat-ggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacat |
322 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || | ||| ||| | | || |||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
21705036 |
aagagccagttgatcaaccttaatattcatcggcagtaggtacataatg-------ttatccaagatatggagcaaagaacatccatccatgaacaatat |
21704944 |
T |
|
| Q |
323 |
ccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgtta |
422 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| |||||| || |||| || ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
21704943 |
ccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggttagagttaaaacatcatcgctaaaacgacccttcagttcatcaatgtta |
21704844 |
T |
|
| Q |
423 |
tcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
21704843 |
tctgcaatctttttgtgtagttcctctggaataagtccggtgttttctatgtattttgctgcccacataagcttgtacttctctcctaa |
21704755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 32 - 505
Target Start/End: Complemental strand, 15714208 - 15713741
Alignment:
| Q |
32 |
tccttttccttttctttttggaaccatgttcttcttcttctctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgctt |
131 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||| || || ||||| || | |||||| ||| ||||| | |
|
|
| T |
15714208 |
tccttctccttttctgtttggaaccccgttcttctccttctttgactctgactcatctggcgtatccaaatgacgatggctgaggaatttccacatgcat |
15714109 |
T |
|
| Q |
132 |
tctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaacca |
231 |
Q |
| |
|
|||||| |||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
15714108 |
attatcaactcactctcgttgttatctttccacaatagcttgagtacttcataaggaagttgattctccaacaaaagcacatccattatcacaagatcca |
15714009 |
T |
|
| Q |
232 |
gttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaa |
331 |
Q |
| |
|
||||||||| ||||||||| ||| ||| || | | || | | || |||||||||| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
15714008 |
gttgatcaagcttaatatttatgggccctg---cgtgaacaatg---ttatccaagatatgcagcaaagagcatccatccacgaacaacatccatgacag |
15713915 |
T |
|
| Q |
332 |
cttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatc |
431 |
Q |
| |
|
||||||||| ||||||| ||| ||| ||| ||| || |||| ||| ||||||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15713914 |
cttttcttctaggctaccaaatccttgaagtgactttccggttaaagttaaaacatcgtcactaaaatgacacttcagttcatcaatgttatcagcaatc |
15713815 |
T |
|
| Q |
432 |
tttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctc |
505 |
Q |
| |
|
|||||||| || |||||| ||||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15713814 |
tttttgtgcagttcctctagaatgcttccagtgtttttgatgtattttgccgcccacataagcttgtacttctc |
15713741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 134 - 493
Target Start/End: Complemental strand, 21746015 - 21745662
Alignment:
| Q |
134 |
tatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagt |
233 |
Q |
| |
|
||||||| |||| |||| | |||||| |||||||||| |||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||| | | |
|
|
| T |
21746015 |
tatcaattcactctcgttgttatcttttcacaatagctagagtacttcataaggcagttgattctccaacaaaagtacatcgatcatcacaagaataact |
21745916 |
T |
|
| Q |
234 |
tgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaact |
333 |
Q |
| |
|
|||||| |||||||||||||| | ||| | | || || |||||||||| ||||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
21745915 |
agatcaagcttaatattcatgtctcgtgggtgaacaa------tgttatccaagatatggagcaaagaacatccatctacgaataacatccacgacagct |
21745822 |
T |
|
| Q |
334 |
tttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctt |
433 |
Q |
| |
|
|||||||||||| ||||||| |||||| || ||| ||| ||||||||| ||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21745821 |
tttcttcaaggcattcaaagccttgaagagaatttccagttaaagttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcaacaatctt |
21745722 |
T |
|
| Q |
434 |
tttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataag |
493 |
Q |
| |
|
|||||| ||||| | |||| ||| || | || || | ||||||||||||||||||||| |
|
|
| T |
21745721 |
tttgtgcagatcgtgtggattgtggcctgtattctcgaggtattttgctgcccacataag |
21745662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 278 - 511
Target Start/End: Complemental strand, 21792356 - 21792123
Alignment:
| Q |
278 |
tttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaa |
377 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| |||||| |||||||| | |||| || |
|
|
| T |
21792356 |
tttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaa |
21792257 |
T |
|
| Q |
378 |
gctaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatg-tatccgttgttttctatgtat |
476 |
Q |
| |
|
| ||||||||||||| |||| || ||||||| |||||||||||| |||||||||||||| ||||| | ||||| | || ||| |||| |||||| |
|
|
| T |
21792256 |
gttaaaacatcatcgctaaaacgatccttcagcgtatcaatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtt-tttttgatgtat |
21792158 |
T |
|
| Q |
477 |
tttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
21792157 |
tctgctgcccacataagcttgtacttctctcctaa |
21792123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 21792497 - 21792388
Alignment:
| Q |
116 |
gaaattcatcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatcc |
215 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| | || || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
21792497 |
gaaattcgtcatgctttctattaatgcactctggttgtcgtctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc |
21792398 |
T |
|
| Q |
216 |
atcatcacaa |
225 |
Q |
| |
|
|||||||||| |
|
|
| T |
21792397 |
atcatcacaa |
21792388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 21786112 - 21786055
Alignment:
| Q |
19 |
ataaactatgctctccttttccttttctttttggaaccatgttcttcttcttctctga |
76 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
21786112 |
ataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctga |
21786055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 21656950 - 21656895
Alignment:
| Q |
124 |
tcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtact |
179 |
Q |
| |
|
||||||||| ||||||| |||| | || ||||||||||||||||||||||||||| |
|
|
| T |
21656950 |
tcatgctttttatcaattcactcttgttgtcatctttccacaatagcttgagtact |
21656895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 124 - 408
Target Start/End: Complemental strand, 25872 - 25588
Alignment:
| Q |
124 |
tcatgctttctatcaatccactgtcgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcac |
223 |
Q |
| |
|
||||||||| ||||||| |||| || | || | ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
25872 |
tcatgctttgtatcaattcactctcattctcgtttttccacaatagcttgagtacttcataaggaagttgattttccaacaaaaccacatccaccatcac |
25773 |
T |
|
| Q |
224 |
aagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattcgctttctccaagatatacagcaaagaacatccatccacgaacaacatc |
323 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || ||| | |||| | | || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25772 |
aagaaaaagttgatcaaccttaatattcattttccctgggttattacgtctggcattctccaagatatgtagcaaagaacatccatccacgaacaacatc |
25673 |
T |
|
| Q |
324 |
cacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttca |
408 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||| |||||||| | | ||| ||| ||||||||| ||| |||||||||||||| |
|
|
| T |
25672 |
aacgacagcttttcttcaagggtaccaaagccttcaagagactttttagttaaagttaaaacatcctcgctaaaatgacccttca |
25588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 25470 - 25422
Alignment:
| Q |
463 |
tgttttctatgtattttgctgcccacataagtttgtacttctctgctaa |
511 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||||||| |||| |
|
|
| T |
25470 |
tgttttctatgtattctgctgcccacttaagcttgtacttctctcctaa |
25422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 18192138 - 18192210
Alignment:
| Q |
380 |
taaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctgga |
452 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||| ||||||||| ||||| | || || |||||||| |||| |
|
|
| T |
18192138 |
taaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaatatcttggtatagatcctttgga |
18192210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 18192060 - 18192104
Alignment:
| Q |
296 |
caaagaacatccatccacgaacaacatccacgacaacttttcttc |
340 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | ||||||||| |
|
|
| T |
18192060 |
caaagaacatccatccacaaacaacatccatgatagcttttcttc |
18192104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University