View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20371_high_5 (Length: 404)
Name: NF20371_high_5
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 6943486 - 6943860
Alignment:
| Q |
13 |
gagatggtaaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatg |
112 |
Q |
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| T |
6943486 |
gagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatcttggaatg |
6943585 |
T |
|
| Q |
113 |
ttcttgttcagagccctccctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaaccct |
212 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6943586 |
ttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaataaaaaacaaaattatgtaaccct |
6943685 |
T |
|
| Q |
213 |
tctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatcccataacaatggaaggtagttgtaacggtgttttttgtctc |
312 |
Q |
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| T |
6943686 |
tctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatcccataacaatggaaggtatttgtaacggtgttttttgtctc |
6943785 |
T |
|
| Q |
313 |
aaaggtttgtgtttgtataatagttgtgtaaatgagttagccatctttaacccgacaactagagaggtccttcgt |
387 |
Q |
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| T |
6943786 |
aaaggtttctgttggtataatagttgtgtaaatgagttagccatcttgaacccgacaactagagaggtccatcgt |
6943860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 7488548 - 7488311
Alignment:
| Q |
22 |
aatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttc |
121 |
Q |
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| T |
7488548 |
aatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactc |
7488449 |
T |
|
| Q |
122 |
agagccctccctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaacccttctctcatg |
221 |
Q |
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||| ||| ||||||||||| || ||||||| || ||| ||||||||||| ||||||||||||| |||||| | || |||||||| ||||||||||| |
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| T |
7488448 |
agaaccccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatg |
7488349 |
T |
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| Q |
222 |
tgacaacctaatacacatcaaatcccccttttccaaca |
259 |
Q |
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| ||| | |||||||||||||||||| ||||||||||| |
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| T |
7488348 |
tcacaccgtaatacacatcaaatccctcttttccaaca |
7488311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 7475556 - 7475392
Alignment:
| Q |
174 |
tctcatgatccttaatgaaaaacaaaattatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatccc |
273 |
Q |
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|||||| |||||| ||||| ||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| || ||| | || |
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| T |
7475556 |
tctcataatcctttatgaagaacaaccctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacct |
7475457 |
T |
|
| Q |
274 |
ataacaatggaa------ggtagttgtaacggtgttttttgtctcaaaggtttgtgtttgtataa |
332 |
Q |
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|||||||| ||| ||||||| || |||||||| ||||||||||||||||||| |||||| |
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| T |
7475456 |
ataacaattgaatcatatggtagtttcaatggtgttttctgtctcaaaggtttgtgttggtataa |
7475392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 7873147 - 7873351
Alignment:
| Q |
32 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
131 |
Q |
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|||||||||||||||||||||||| ||| || | |||||||||||||| ||||| ||||||||| |||| |||||||||| |||| |||||| ||| | |
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| T |
7873147 |
tagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaacctac |
7873246 |
T |
|
| Q |
132 |
ctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaacccttctctc--atgtgacaacc |
229 |
Q |
| |
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|||| ||||| | |||| ||||| ||| |||||| | || ||| |||||||||| ||||| || ||||||||||||||||| ||||||||||| |
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| T |
7873247 |
ctttatgaaaagaaggcagatgaacatgtttgatag--ccag-ctcttgatccttaacaaaaaagaaccctatgtaacccttctctcatatgtgacaacc |
7873343 |
T |
|
| Q |
230 |
taatacac |
237 |
Q |
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|||||||| |
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| T |
7873344 |
taatacac |
7873351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 7475674 - 7475565
Alignment:
| Q |
32 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
131 |
Q |
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|||||||||||| |||||||| | |||||||||| |||||||||||||| | || ||| ||||||||| |||||||||| |||| |||||| ||| | |
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| T |
7475674 |
tagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttcttggaatgatcttattcagacccccac |
7475575 |
T |
|
| Q |
132 |
ctttctgaaa |
141 |
Q |
| |
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|||||||||| |
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|
| T |
7475574 |
ctttctgaaa |
7475565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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