View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20371_high_8 (Length: 284)
Name: NF20371_high_8
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 30941560 - 30941308
Alignment:
| Q |
15 |
actccaaaatggataactaatgttggtgaagtttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggattaag |
114 |
Q |
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| T |
30941560 |
actccaaaatggataactaacgttggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggattatg |
30941461 |
T |
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| Q |
115 |
aagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgtagatgaagagggggaggcatttgtggatgtgatgaaaaatgaagcaattaca |
214 |
Q |
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| T |
30941460 |
aagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgaagatgaagagggggaggcatttgtggatgtgatgaaaaatgaagcaattaca |
30941361 |
T |
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| Q |
215 |
tggttcataagataaaactaagcaattacatgcagatactaatccataccctt |
267 |
Q |
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| T |
30941360 |
tggctcataagataaaactaagcaattacatgcagatactaatccataccctt |
30941308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 30977021 - 30976838
Alignment:
| Q |
11 |
taatactccaaaatggataactaatgttggtgaagtttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggat |
110 |
Q |
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| T |
30977021 |
taatactccaaaatgggtaactaatattggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaat |
30976922 |
T |
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| Q |
111 |
taagaagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgtagatgaagagggggaggcatttgtggatgtga |
194 |
Q |
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| T |
30976921 |
taagaagagtgagagtaagagacagatgttgatgatgaaggaaaaaggcaaaagatgatgaggggagggcatttgtggatgtga |
30976838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 30983460 - 30983277
Alignment:
| Q |
11 |
taatactccaaaatggataactaatgttggtgaagtttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggat |
110 |
Q |
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| T |
30983460 |
taatactccaaaatgggtaactaatattggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaat |
30983361 |
T |
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| Q |
111 |
taagaagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgtagatgaagagggggaggcatttgtggatgtga |
194 |
Q |
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| T |
30983360 |
taagaagagtgagagtaagagacagatgttgatgatgaaggaaaaaggcaaaagatgatgaggggagggcatttgtggatgtga |
30983277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 30989624 - 30989441
Alignment:
| Q |
11 |
taatactccaaaatggataactaatgttggtgaagtttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggat |
110 |
Q |
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| T |
30989624 |
taatactccaaaatgggtaactaatattggtgaaatttccacaactaaaaggtgcacaagatttgaagctttcaacatcactagtgacatgtattggaat |
30989525 |
T |
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| Q |
111 |
taagaagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgtagatgaagagggggaggcatttgtggatgtga |
194 |
Q |
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| T |
30989524 |
taagaagagtgagagtaagagacagatgttgatgatgaaggaaaaaggcaaaagatgatgaggggagggcatttgtggatgtga |
30989441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 31009345 - 31009153
Alignment:
| Q |
11 |
taatactccaaaatggataactaatgttggtgaagtttccacaactaaaaggtgcacaagatttgaagctttcaacgtcactagtgatatgtattgggat |
110 |
Q |
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| T |
31009345 |
taatactccaaaatgggtaactaatgttggtgaaatctccacatctaaaaggtgcacaagatttgtagctttcaccgtcactattgacatgtattgggat |
31009246 |
T |
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| Q |
111 |
taag---aagagtgcaaggaagagaaagatgttgatgatgaaggaaaaagcctgtagatgaagagggggaggcatttgtggatgtgatgaaaa |
200 |
Q |
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| T |
31009245 |
taagaagaagagtgagaggaagagaaagatgttgatgatgatggaacaatgaagaataagaagaggtggaggcatttgtggaggtgatgaaaa |
31009153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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