View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20371_low_1 (Length: 629)
Name: NF20371_low_1
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 24 - 614
Target Start/End: Original strand, 40146548 - 40147137
Alignment:
| Q |
24 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40146548 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgctgcggcaga |
40146647 |
T |
|
| Q |
124 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatc |
223 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146648 |
gaa-cacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatc |
40146746 |
T |
|
| Q |
224 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146747 |
acaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
40146846 |
T |
|
| Q |
324 |
ttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatccca |
423 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146847 |
ttcattaattcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatccca |
40146946 |
T |
|
| Q |
424 |
tacgatttccttttactatagagtcacaaaagaatgactctgatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
523 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40146947 |
tacgatttccttttactatagagccacaaaagaatgactctgatgataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaat |
40147046 |
T |
|
| Q |
524 |
cgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40147047 |
cgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacacatctttggcgctctgtg |
40147137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 24 - 433
Target Start/End: Complemental strand, 8103436 - 8103025
Alignment:
| Q |
24 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
123 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||| | || ||||| ||||| ||||||||||| || | |||||||||||||| | | || |
|
|
| T |
8103436 |
ttgcaggccgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactga |
8103337 |
T |
|
| Q |
124 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatc |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |||| | | | || | ||||| |||||||||||||| |
|
|
| T |
8103336 |
g-aacacttgtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatc |
8103238 |
T |
|
| Q |
224 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
323 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| ||| || ||||| | |
|
|
| T |
8103237 |
acaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtat |
8103138 |
T |
|
| Q |
324 |
ttcattaactcatgggcgaaaatctcgc---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatc |
420 |
Q |
| |
|
|||||||| || ||||| ||||||| | ||||||||||||||||| |||||||||| ||| || ||||||||||||||| |||||||||| || |
|
|
| T |
8103137 |
ttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatgtc |
8103038 |
T |
|
| Q |
421 |
ccatacgatttcc |
433 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8103037 |
ccatacgatttcc |
8103025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 610
Target Start/End: Complemental strand, 8102953 - 8102812
Alignment:
| Q |
469 |
ataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
568 |
Q |
| |
|
||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || | ||||| ||||| |
|
|
| T |
8102953 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa |
8102854 |
T |
|
| Q |
569 |
aatatcatccctccaatcactttttacacatctttggcgctc |
610 |
Q |
| |
|
|||||| ||||| ||| |||||||| |||| |||||| |||| |
|
|
| T |
8102853 |
aatatcttcccttcaagcactttttgcacacctttggtgctc |
8102812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 40409539 - 40409631
Alignment:
| Q |
24 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccg |
116 |
Q |
| |
|
|||||||||||||||| | |||||| || || ||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
40409539 |
ttgcaggccgtctagagagaacagaccataaagacaacaccatttcgtgttgtgtcacatgcaacaatgcaggtgcgctctttgtgcatgccg |
40409631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 201 - 468
Target Start/End: Original strand, 7655475 - 7655742
Alignment:
| Q |
201 |
gttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttg |
300 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| | ||| ||||| || ||| ||||||||||| |||||||||| |||| || ||||||| || | |
|
|
| T |
7655475 |
gttagaaactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtag |
7655574 |
T |
|
| Q |
301 |
ttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtt |
400 |
Q |
| |
|
||||||| ||||||| |||| |||||| || || ||||| |||| || ||||||||| ||||| |||| || | |||||| || |||||||| |
|
|
| T |
7655575 |
ctgacggacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtt |
7655674 |
T |
|
| Q |
401 |
tccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
468 |
Q |
| |
|
||||| ||| ||||||| || |||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
7655675 |
tccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg |
7655742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 436
Target Start/End: Complemental strand, 7638027 - 7637613
Alignment:
| Q |
24 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcaga |
123 |
Q |
| |
|
|||| |||||||| ||||||| || |||| |||||||| ||||| |||||||| | ||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
7638027 |
ttgccggccgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcaga |
7637928 |
T |
|
| Q |
124 |
gaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatc |
223 |
Q |
| |
|
||| |||||||| | ||||| || | | ||||||||| ||||| || || |||| ||| ||| | ||| || ||| | || || ||||||||||| |
|
|
| T |
7637927 |
gaat-acttgtgttgcagacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatc |
7637829 |
T |
|
| Q |
224 |
acaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggctt |
323 |
Q |
| |
|
| |||||||||| | || ||||| || ||| |||||||||| | |||||||||| |||||||||||| || ||||||||| ||||| |||| | |
|
|
| T |
7637828 |
aaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcat |
7637729 |
T |
|
| Q |
324 |
ttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatc |
420 |
Q |
| |
|
||||| || || ||||| ||||||| ||| ||||||| || ||||| |||| |||| | ||| ||||| ||||||||||||| |||| |||||| | |
|
|
| T |
7637728 |
ttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggc |
7637629 |
T |
|
| Q |
421 |
ccatacgatttccttt |
436 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
7637628 |
ctatacgatttccttt |
7637613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 210 - 436
Target Start/End: Complemental strand, 7629396 - 7629167
Alignment:
| Q |
210 |
tacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggag |
309 |
Q |
| |
|
||||||||||| ||| |||||||||| | ||| ||||| || ||| |||||||||| |||| ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
7629396 |
tacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaa |
7629297 |
T |
|
| Q |
310 |
agtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaag |
406 |
Q |
| |
|
||||| |||| |||||| || |||||||| ||||||| ||| ||||||| || ||||| |||| |||| ||| |||||||||||||||| |
|
|
| T |
7629296 |
agtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaa |
7629197 |
T |
|
| Q |
407 |
tggtattcaacatcccatacgatttccttt |
436 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
7629196 |
tggtattcaacttcccatacgatttccttt |
7629167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 174 - 441
Target Start/End: Complemental strand, 7607047 - 7606777
Alignment:
| Q |
174 |
gtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttca |
273 |
Q |
| |
|
||||||||||||||| | || | | ||| |||||| || |||||||| ||| |||||||||| | ||| ||| | || ||| |||||||||| | |||| |
|
|
| T |
7607047 |
gtcgattcattttttgccttcatcggagataaaaactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttca |
7606948 |
T |
|
| Q |
274 |
ttggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttgca---atcaagt |
370 |
Q |
| |
|
|||||| | || ||||||| || ||||||||| ||||| |||| |||||| || |||||||| |||| || || |||||||| ||||| | |
|
|
| T |
7606947 |
ttggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaat |
7606848 |
T |
|
| Q |
371 |
atccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttacta |
441 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7606847 |
atccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctttcacta |
7606777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 436
Target Start/End: Complemental strand, 7616187 - 7615778
Alignment:
| Q |
29 |
ggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaac |
128 |
Q |
| |
|
|||||||| ||||||| || ||||| ||||||||||| || ||||| || | ||||||||||||||| | |||||| ||||||| || || ||||| |
|
|
| T |
7616187 |
ggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaat- |
7616089 |
T |
|
| Q |
129 |
acttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaac |
228 |
Q |
| |
|
|||||||| | |||||| || | | ||||| || ||||| || || ||||||||||| | |||||| | ||| ||| ||||||||||| ||| ||| |
|
|
| T |
7616088 |
acttgtgttgctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaac |
7615989 |
T |
|
| Q |
229 |
cattgttagttgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcat |
328 |
Q |
| |
|
| ||||| | || ||||| || ||| |||||||||| | || ||||||| | || ||||||| || |||||||||||||| |||| |||||| |
|
|
| T |
7615988 |
cgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcat |
7615889 |
T |
|
| Q |
329 |
taactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccata |
425 |
Q |
| |
|
|| |||||||| |||| || ||| ||||||| || ||||| |||| |||| | ||| ||||| ||||||||||||| |||| ||||||| |||||| |
|
|
| T |
7615888 |
caattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccata |
7615789 |
T |
|
| Q |
426 |
cgatttccttt |
436 |
Q |
| |
|
||||||||||| |
|
|
| T |
7615788 |
cgatttccttt |
7615778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
| Q |
499 |
tattccatttcacaaaggagaaaatcgctcaactgaaat |
537 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39082834 |
tattccatttcacaaaggagaaaatcgcggaactgaaat |
39082796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 574
Target Start/End: Complemental strand, 7629084 - 7629008
Alignment:
| Q |
498 |
ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatc |
574 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||||||| ||| ||||| |||||||||| || ||||||||| |
|
|
| T |
7629084 |
ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatc |
7629008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 7629581 - 7629509
Alignment:
| Q |
24 |
ttgcaggccgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcagg |
96 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||||||| || || || ||||| || | ||||||||||||||| |
|
|
| T |
7629581 |
ttgctggccgtcttgaaataacggaacacaaggacaatactgtctcgtgttctgttatatgcaacaatgcagg |
7629509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 56 - 435
Target Start/End: Complemental strand, 6501435 - 6501058
Alignment:
| Q |
56 |
gacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgc |
155 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| || || |||| | ||| ||| | |||||| ||||| | |
|
|
| T |
6501435 |
gacaacaatgtttcatgttccatcacatgcaacaatgcaggtgtactctttgtccacgctgcaatagagga-cacacgtgatgttgacatcgttggaccc |
6501337 |
T |
|
| Q |
156 |
acctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagt |
255 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||| || | | | | || ||| |||||||||| |||| |||||||| | | |||||||||||||||| |
|
|
| T |
6501336 |
acctaccttcctcttatcgtccattcattttttcctttcaacggggctagaaactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagt |
6501237 |
T |
|
| Q |
256 |
tagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtgg |
355 |
Q |
| |
|
|||||| ||| |||| ||||| |||| ||| ||||||| ||| || ||| |||||| |||| ||| || | || ||||| |||| || ||||| |
|
|
| T |
6501236 |
tagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtggaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtgg |
6501137 |
T |
|
| Q |
356 |
ttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttcctt |
435 |
Q |
| |
|
|||||| |||||| ||||||||||| | | |||||||||| |||||||| || |||||| | | ||||||||||||||| |
|
|
| T |
6501136 |
ttgttgtaatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatattcagcgttccatacgatttcctt |
6501058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 340
Target Start/End: Complemental strand, 11969713 - 11969553
Alignment:
| Q |
180 |
tcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtt |
279 |
Q |
| |
|
|||||||||||| | | | |||||| ||| || ||||| |||||| | |||||| | | || ||||| |||||||||||||| ||| |||||||||| | |
|
|
| T |
11969713 |
tcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggct |
11969614 |
T |
|
| Q |
280 |
ttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggc |
340 |
Q |
| |
|
||||| | || |||| | |||||||||| |||||| |||| |||||| || |||||||| |
|
|
| T |
11969613 |
ttacaatcaatcatgtcgccgttgacggagtgtccacttggcatttcatcaattcatgggc |
11969553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
| Q |
465 |
gatgataacgaaaaattcaattcatcagagaggttattccatttcacaaaggagaaaat |
523 |
Q |
| |
|
||||| || |||||| ||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11969428 |
gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat |
11969370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 468
Target Start/End: Original strand, 8935318 - 8935706
Alignment:
| Q |
82 |
atgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattc |
181 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||||||| |||||||| | |||||| || | | ||||||||| || || || || ||||| |
|
|
| T |
8935318 |
atgcaacaatgcaggtgtactctttgtccatgccagatcagagaat-acttgtgttgctgacattctagaacccacctacgtaccaccaattgttgattc |
8935416 |
T |
|
| Q |
182 |
attttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtttt |
281 |
Q |
| |
|
||||||| | |||||| |||| || ||||||||||||||| |||||||||| | || ||||| || |||||| ||||||| | |||||||||| |
|
|
| T |
8935417 |
attttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgc |
8935516 |
T |
|
| Q |
282 |
acatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaac |
378 |
Q |
| |
|
|||||||||| || || |||||||| |||| |||| |||||| || || ||||| ||||||| ||| ||||||| || ||||| |||| |||| |
|
|
| T |
8935517 |
tcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaac |
8935616 |
T |
|
| Q |
379 |
tcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
468 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||| || |||||||||||||| ||| | ||| |||||||||| ||||||||| |
|
|
| T |
8935617 |
ctccaacactagaacgttggtttccggatggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatg |
8935706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 8934377 - 8934655
Alignment:
| Q |
82 |
atgcaacaatgcaggcgcgctctttgtccatgccgcggcagagaaacacttgtgtaggtgacatacttggatgcacctacgttcctcccatcgtcgattc |
181 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||| |||||||| | |||||| || | | ||||||||| ||||| || || ||||| |
|
|
| T |
8934377 |
atgcaacaatgcagatgtactctttgtccatgccagatcagagaat-acttgtgttgctgacattctagaacccacctacgtacctccaattgttgattc |
8934475 |
T |
|
| Q |
182 |
attttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagagttagttgacggcttcttcattggtttt |
281 |
Q |
| |
|
||||||| | |||||| | |||| || ||||||||||||||| |||||||||| | || ||||| || |||||| ||||||| | |||||||||| |
|
|
| T |
8934476 |
attttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgc |
8934575 |
T |
|
| Q |
282 |
acatttaaccatgcggttgttgacggagagtccacatggcttttcattaactcatgggcgaaaatctcgcgtggttgttg |
361 |
Q |
| |
|
|||||||||| || || |||||||| |||| |||| |||||| || |||||||| ||||||| ||| ||||||| |
|
|
| T |
8934576 |
tcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttg |
8934655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 292
Target Start/End: Original strand, 8929994 - 8930131
Alignment:
| Q |
155 |
cacctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagttgtgcaagtgacagag |
254 |
Q |
| |
|
||||||||| ||||| || || |||||||||||| | |||||| | |||| || ||||||| ||||||| |||||||||| | | ||||| || ||| |
|
|
| T |
8929994 |
cacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccattgttggcatttcaagtaactgag |
8930093 |
T |
|
| Q |
255 |
ttagttgacggcttcttcattggttttacatttaacca |
292 |
Q |
| |
|
||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
8930094 |
ttaattgacggtattttcattggttgctcatttaacca |
8930131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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