View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20371_low_12 (Length: 253)
Name: NF20371_low_12
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 39614849 - 39615067
Alignment:
| Q |
16 |
atcgaatcagctcaataaagcatcaaaaataccaaattcaagattgaaaaattgaagttaacagttgaacatcaaaacttaaagattaaaaaggaccaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39614849 |
atcgaatcagctcaataaagcatcaaaaataccaaattcaagattgaaaaattgaagttaacagttgaacatcaaaacttaaagattaaaaaggaccaac |
39614948 |
T |
|
| Q |
116 |
atgatcaaggaaaataatgtagagtcgcctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgtacttcttccttctactgcta |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39614949 |
atgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgcacttcttccttctactgcta |
39615048 |
T |
|
| Q |
216 |
ttgaagtttcagctagtgg |
234 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39615049 |
ttgaagtttcagctagtgg |
39615067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 1588382 - 1588278
Alignment:
| Q |
88 |
caaaacttaaagattaaaaaggaccaacatgatcaaggaaaataatgtagagtcgcctaaggtgtcatagtcaaattgttaaaagcaacataatataaaa |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| | |||| | |||||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
1588382 |
caaaacttaaagattaaaaaggaccaacatgatcaaggagaataatct--agtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaa |
1588285 |
T |
|
| Q |
188 |
cattttg |
194 |
Q |
| |
|
||||||| |
|
|
| T |
1588284 |
cattttg |
1588278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 19268259 - 19268331
Alignment:
| Q |
88 |
caaaacttaaagattaaaaaggaccaacatgatcaaggaaaataatgtagagtcgcctaaggtgtcatagtcaaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||| |
|
|
| T |
19268259 |
caaaacttaaagattaaaaaggaccaacatgatcaaggagaataatct--agtcatttaaggtgtcatagtcaaa |
19268331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 33138259 - 33138205
Alignment:
| Q |
83 |
aacatcaaaacttaaagattaaaaaggaccaacatgatcaaggaaaataatgtag |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33138259 |
aacataaaaacttaaagattaaaaaggaccaacatgatcaagtgcaataatgtag |
33138205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University