View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20371_low_13 (Length: 246)

Name: NF20371_low_13
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20371_low_13
NF20371_low_13
[»] chr1 (3 HSPs)
chr1 (100-237)||(26496050-26496184)
chr1 (17-47)||(16960945-16960975)
chr1 (152-196)||(16960828-16960872)
[»] chr8 (1 HSPs)
chr8 (9-74)||(38016354-38016423)
[»] chr6 (3 HSPs)
chr6 (152-208)||(4092060-4092115)
chr6 (138-208)||(4435824-4435893)
chr6 (17-49)||(4435736-4435768)
[»] chr5 (1 HSPs)
chr5 (138-208)||(37719265-37719334)
[»] chr3 (2 HSPs)
chr3 (138-208)||(46594945-46595014)
chr3 (17-50)||(46595069-46595102)
[»] chr2 (1 HSPs)
chr2 (62-109)||(17950235-17950282)
[»] chr4 (2 HSPs)
chr4 (17-62)||(47521219-47521264)
chr4 (152-208)||(47521322-47521377)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 26496050 - 26496184
Alignment:
Q  100 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  26496050 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactg-tttttaga 26496148  T
Q  200 atttctttagttgcaacctaccaatatgtgactctttt 237  Q
    |||| |||||||| |||||||||  |||||||||||||    
T  26496149 atttgtttagttgaaacctacca--atgtgactctttt 26496184  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 16960975 - 16960945
Alignment:
Q  17 ttttgagaataaaaagtggtaaaaagaatgg 47  Q
    |||||||||||||||||||||||||||||||    
T  16960975 ttttgagaataaaaagtggtaaaaagaatgg 16960945  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 16960872 - 16960828
Alignment:
Q  152 tgtagaatcgcttttgttttaacaggttgtatataactgattttt 196  Q
    ||||||||| |||||||||||||||||| ||||| |||| |||||    
T  16960872 tgtagaatctcttttgttttaacaggttttatatcactgtttttt 16960828  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 38016423 - 38016354
Alignment:
Q  9 aatggtgattttgagaataaaaagtggtaaaaagaa----tggagggttttgtttaatcaaaagaaattg 74  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  38016423 aatggtgattttgagaataaaaagtggtaaaaagaatggatggagggttttgtttaatcaaaagaaattg 38016354  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 4092060 - 4092115
Alignment:
Q  152 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 208  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||    
T  4092060 tgtagaatctcttttgttttaacaggttgtatatcactg-tttttagaatttgttta 4092115  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 4435824 - 4435893
Alignment:
Q  138 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 208  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  4435824 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 4435893  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 4435736 - 4435768
Alignment:
Q  17 ttttgagaataaaaagtggtaaaaagaatggag 49  Q
    |||||||||||||||||||||||||||| ||||    
T  4435736 ttttgagaataaaaagtggtaaaaagaacggag 4435768  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 37719334 - 37719265
Alignment:
Q  138 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 208  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  37719334 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 37719265  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 46595014 - 46594945
Alignment:
Q  138 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 208  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  46595014 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 46594945  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 46595102 - 46595069
Alignment:
Q  17 ttttgagaataaaaagtggtaaaaagaatggagg 50  Q
    |||||||||||||||||||||||||||| |||||    
T  46595102 ttttgagaataaaaagtggtaaaaagaacggagg 46595069  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 17950235 - 17950282
Alignment:
Q  62 tcaaaagaaattgctaaagaatgttgaaattatgaataaagctatgta 109  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||    
T  17950235 tcaaaagaaattgttgaaggatgttgaaactatgaataaagctatgta 17950282  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 47521219 - 47521264
Alignment:
Q  17 ttttgagaataaaaagtggtaaaaagaatggagggttttgtttaat 62  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||    
T  47521219 ttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaat 47521264  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 47521322 - 47521377
Alignment:
Q  152 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 208  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||| ||||    
T  47521322 tgtagaatctcttttgtttaaacaggttgtatatcattg-tttttagaatttgttta 47521377  T

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