View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20371_low_18 (Length: 226)
Name: NF20371_low_18
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14705025 - 14705227
Alignment:
| Q |
1 |
tacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactatctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttg |
100 |
Q |
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| T |
14705025 |
tacaccgccgtaagaaacgagtttcgccgacgagttggcccaaaactacctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttg |
14705124 |
T |
|
| Q |
101 |
taccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaacattgtcatacacagcaccgccggtagcaccacatgcttggccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
14705125 |
taccaactataacattcttgttctcaggcatgaatgtaacactaccaccagacaacatcgtcatacacagcaccgccggtagcacaacatgtttggccat |
14705224 |
T |
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| Q |
201 |
ggc |
203 |
Q |
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||| |
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| T |
14705225 |
ggc |
14705227 |
T |
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 4035844 - 4035658
Alignment:
| Q |
17 |
acgagtttcgccgacgagttggcccaaaactatctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacatt |
116 |
Q |
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||||||| || ||| ||||||| ||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
4035844 |
acgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacatt |
4035745 |
T |
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| Q |
117 |
cttgttctcaggcatgaatgtaacactaccaccagacaacattgtcatacacagcaccgccggtagcaccacatgcttggccatggc |
203 |
Q |
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| T |
4035744 |
catattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggc |
4035658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 13951859 - 13952045
Alignment:
| Q |
17 |
acgagtttcgccgacgagttggcccaaaactatctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacatt |
116 |
Q |
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||||||| || ||| ||||||| ||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
13951859 |
acgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacatt |
13951958 |
T |
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| Q |
117 |
cttgttctcaggcatgaatgtaacactaccaccagacaacattgtcatacacagcaccgccggtagcaccacatgcttggccatggc |
203 |
Q |
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| | ||| | || ||||| || ||| | |||| ||||||||| | ||||| |||||||| || |||||||| || ||||||||||| |
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| T |
13951959 |
catattcaccggtatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggc |
13952045 |
T |
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