View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20371_low_2 (Length: 595)

Name: NF20371_low_2
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20371_low_2
NF20371_low_2
[»] chr8 (22 HSPs)
chr8 (13-567)||(6455991-6456544)
chr8 (13-519)||(6449524-6450030)
chr8 (139-452)||(6262203-6262516)
chr8 (99-229)||(6362046-6362176)
chr8 (148-241)||(7457951-7458044)
chr8 (148-241)||(7470353-7470446)
chr8 (400-503)||(6320552-6320655)
chr8 (400-503)||(6331014-6331117)
chr8 (99-227)||(6351161-6351289)
chr8 (147-227)||(6423126-6423206)
chr8 (147-229)||(6330761-6330843)
chr8 (147-229)||(6368869-6368951)
chr8 (147-229)||(6320299-6320381)
chr8 (400-446)||(6390101-6390147)
chr8 (400-460)||(6273673-6273733)
chr8 (400-460)||(6362347-6362407)
chr8 (400-460)||(7458203-7458263)
chr8 (178-229)||(6273451-6273502)
chr8 (178-229)||(6389882-6389933)
chr8 (115-218)||(6409068-6409171)
chr8 (400-449)||(6351462-6351511)
chr8 (400-460)||(7470605-7470665)
[»] chr5 (2 HSPs)
chr5 (13-522)||(9605983-9606492)
chr5 (52-354)||(9590505-9590805)
[»] chr2 (2 HSPs)
chr2 (13-476)||(42689382-42689845)
chr2 (43-452)||(42692033-42692442)
[»] chr3 (1 HSPs)
chr3 (388-482)||(36745652-36745746)
[»] chr1 (3 HSPs)
chr1 (169-310)||(36926274-36926415)
chr1 (415-460)||(47127110-47127155)
chr1 (173-245)||(47126868-47126940)
[»] chr7 (1 HSPs)
chr7 (176-227)||(46709183-46709234)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Original strand, 6455991 - 6456544
Alignment:
Q  13 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6455991 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatactccg 6456090  T
Q  113 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456091 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 6456190  T
Q  213 tgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6456191 tgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccatgacccttt 6456290  T
Q  313 tctacagcttccttccaccatttttgaatttcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaa 412  Q
    ||||||||||||||||||||  |||| | ||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  6456291 tctacagcttccttccaccaagtttgtagttcagtgtccttttgcactacttcatctgttggataatataaggagacatagtcttgaacccatgccttaa 6456390  T
Q  413 tagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaacagctagtcccct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6456391 tagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaacagctagtcctct 6456490  T
Q  513 gaatcaagcaggcaatttgtttatcaataataatttagaaattgctcctagtttt 567  Q
    ||||||||||| ||||||| |||||||||||||||  ||||||||||||| ||||    
T  6456491 gaatcaagcagacaatttg-ttatcaataataattatgaaattgctcctaatttt 6456544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 6449524 - 6450030
Alignment:
Q  13 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccg 112  Q
    |||||||| ||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6449524 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 6449623  T
Q  113 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 212  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||    
T  6449624 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagctgcatgaagagc 6449723  T
Q  213 tgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttt 312  Q
     |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449724 agaagcagtccatataataatggagcaagattgaaccaagtcttgaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttt 6449823  T
Q  313 tctacagcttccttccaccatttttgaatttcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6449824 tctacagcttccttccaccatttttgaatttcagtgtctttttgcaccgcctcatctgttggatagtataaggagacatagtcttggacccatgccttaa 6449923  T
Q  413 tagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaacagctagtcccct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| || || |||||||| || ||||||||||||| ||| ||    
T  6449924 tagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggccgtgaggggaagagggatcctcaacagctaatcctct 6450023  T
Q  513 gaatcaa 519  Q
    |||||||    
T  6450024 gaatcaa 6450030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 139 - 452
Target Start/End: Original strand, 6262203 - 6262516
Alignment:
Q  139 ctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagc 238  Q
    |||||||||||||||||||| |  ||  | |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||   ||    
T  6262203 ctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataatactgc 6262302  T
Q  239 aagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttg 338  Q
    ||  ||||| ||| ||| |   ||||||||| || ||||||||||||| |||||||  |||||| ||||||  ||||||| |||| ||||||||   |||    
T  6262303 aaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattg 6262402  T
Q  339 aatttcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaatagcatcccatatttctagtccatca 438  Q
     | ||||| ||| |  || | |   ||||||| ||   |||||| |||||| |||||||| ||||||||||||||||||||||| || || |||||||||    
T  6262403 gagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatca 6262502  T
Q  439 acagcataagggta 452  Q
    ||||||||||||||    
T  6262503 acagcataagggta 6262516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 6362046 - 6362176
Alignment:
Q  99 ctcatcatattccggagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaact 198  Q
    ||||||||| || || | ||| ||||| || || |||||||||||   |||||| ||||| | ||||||||||||||| ||||| |||||||| ||||||    
T  6362046 ctcatcatactcaggggatccctgctcaggcatgaatcttctacttttagttggtcggttaacgatatatcctccatacggatattgtccaaaattaact 6362145  T
Q  199 gctgcatgaagagctgaagcagtccatatga 229  Q
    ||||||||||| ||||||||| |||||||||    
T  6362146 gctgcatgaagtgctgaagcaatccatatga 6362176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 7457951 - 7458044
Alignment:
Q  148 gttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaag 241  Q
    ||||| ||||| ||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||| |||||    
T  7457951 gttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag 7458044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 7470353 - 7470446
Alignment:
Q  148 gttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaag 241  Q
    ||||| ||||| ||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||| |||||    
T  7470353 gttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag 7470446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 503
Target Start/End: Original strand, 6320552 - 6320655
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaa 499  Q
    ||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||| |||| |  ||| |||| |||||| |||||||  || |||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6320651  T
Q  500 cagc 503  Q
    ||||    
T  6320652 cagc 6320655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 503
Target Start/End: Original strand, 6331014 - 6331117
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaa 499  Q
    ||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||| |||| |  ||| |||| |||||| |||||||  || |||||||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  500 cagc 503  Q
    ||||    
T  6331114 cagc 6331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 6351161 - 6351289
Alignment:
Q  99 ctcatcatattccggagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaact 198  Q
    ||||||||| || || | ||||| ||| || || |||||||||||    ||||| ||||| ||||||||||||||||| ||||| ||||| || |||||     
T  6351161 ctcatcatactcaggtgatcctttctcaggcatgaatcttctactctttgttggccggttaaggatatatcctccatatggatattgtccgaaattaaca 6351260  T
Q  199 gctgcatgaagagctgaagcagtccatat 227  Q
    ||||||||||| ||||||||| |||||||    
T  6351261 gctgcatgaagtgctgaagcaatccatat 6351289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 6423126 - 6423206
Alignment:
Q  147 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatat 227  Q
    |||||| ||||| ||||| ||||||||||| || || |||||||| ||||| ||||||||||| ||||||||| |||||||    
T  6423126 agttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6423206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 6330761 - 6330843
Alignment:
Q  147 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 229  Q
    |||||| ||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||| | ||||||||| |||||||||    
T  6330761 agttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6330843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 6368869 - 6368951
Alignment:
Q  147 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 229  Q
    |||||| ||||| ||||| || ||||||||  |||| |||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  6368869 agttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 6320299 - 6320381
Alignment:
Q  147 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 229  Q
    |||||| ||||| || |||||||||||||| || || || ||||| ||||| ||||||||| | ||||||||| |||||||||    
T  6320299 agttggtcggttaagtatatatcctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6320381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 6390101 - 6390147
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcata 446  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcata 6390147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 6273673 - 6273733
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttcta 460  Q
    ||||||| ||||||| || ||||||| |||| ||||||| |||||||||||||||| ||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctcta 6273733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 6362347 - 6362407
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttcta 460  Q
    |||||||  ||||||||| |||||||||||||||||||   ||||||||||||||| ||||    
T  6362347 acccatgatttaatagcagcccatatttctagtccatctgaagcataagggtagtcctcta 6362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 7458203 - 7458263
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttcta 460  Q
    ||||||| |||||||||| ||||||| ||||||||||||  ||||||||| ||||| ||||    
T  7458203 acccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctcta 7458263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 6273451 - 6273502
Alignment:
Q  178 ggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 229  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  6273451 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6273502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 6389882 - 6389933
Alignment:
Q  178 ggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 229  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  6389882 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6389933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 6409068 - 6409171
Alignment:
Q  115 gttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctg 214  Q
    ||||||| ||| || || |||||||||||   |||||| ||||| |  || ||||| || |||||||| |||||||| ||||| ||||||||||| ||||    
T  6409068 gttcctttctcaggcatgaatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattgtccaaaattaacagctgcatgaagtgctg 6409167  T
Q  215 aagc 218  Q
    ||||    
T  6409168 aagc 6409171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 6351462 - 6351511
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagg 449  Q
    ||||||| |||||| ||| ||||||||||||||||||||  |||||||||    
T  6351462 acccatgacttaatggcagcccatatttctagtccatcagaagcataagg 6351511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 7470605 - 7470665
Alignment:
Q  400 acccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttcta 460  Q
    ||||||| |||||||||| ||||||| ||||||||||||  | ||||||| ||||| ||||    
T  7470605 acccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctcta 7470665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 13 - 522
Target Start/End: Complemental strand, 9606492 - 9605983
Alignment:
Q  13 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccg 112  Q
    |||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||| | ||    
T  9606492 aatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 9606393  T
Q  113 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 212  Q
    ||||||||| |||||| ||  |||||| |||||| ||||||||||| || ||||| |||||||||||||| |||||||| ||||| ||||||||||||||    
T  9606392 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagc 9606293  T
Q  213 tgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttt 312  Q
     ||||||||||||||||||||||| || ||||| |  || |||  || | |||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  9606292 agaagcagtccatatgataatggaacatgattggattaaatcttgaatattttgcatcttaggccaccatggcttgtctttcaagtcaccatgacctttt 9606193  T
Q  313 tctacagcttccttccaccatttttgaatttcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaa 412  Q
    |||||| |||||||||||||  |||| | ||||||||||||||| |||||||||||  ||||||| || ||||| ||||||||||||||||||| |||||    
T  9606192 tctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcatttggataatacaaggaaacatagtcttggacccatgacttaa 9606093  T
Q  413 tagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatggggggaagacgggtcctcaacagctagtcccct 512  Q
    ||||||||||||| || ||||||||||| |||||||||||||| || | | |||||||||| ||||| || || || || |||||||| |||| ||| ||    
T  9606092 tagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaacggctaatcctct 9605993  T
Q  513 gaatcaagca 522  Q
      ||||||||    
T  9605992 atatcaagca 9605983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 52 - 354
Target Start/End: Complemental strand, 9590805 - 9590505
Alignment:
Q  52 tttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccggagttccttgctccggaataaatcttctactaagagttg 151  Q
    ||||| ||||| ||||||||||| | |||||| ||| |||||||||| || ||||||||  ||||||||| ||| || ||  ||||| ||| ||   |||    
T  9590805 tttggcgtaattgttctcaaatatggcttttggggatttttcaccatttcttcatattcaagagttcctttctctggtatccatcttttaccaactattg 9590706  T
Q  152 gacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattgaaccaa 251  Q
    ||||||| |||||| | | ||  |||||||| |||||||||||||| || ||||||||||| | || |||||||||||||||||| |||||||||| ||     
T  9590705 gacggtttaggataaaacatc--taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattgaatcag 9590608  T
Q  252 gtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtct 351  Q
    ||||  || |||||||||  ||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||| |||||  |||| | ||||||||||    
T  9590607 gtcttgaagagtttgcatgctaggccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtct 9590508  T
Q  352 ttt 354  Q
    |||    
T  9590507 ttt 9590505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 42689845 - 42689382
Alignment:
Q  13 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccg 112  Q
    ||||| || ||||| ||||| ||||| || ||||||||||| || || || |||||||| || |||||||||||||| |||||||| ||||||||||  |    
T  42689845 aatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctcaagtaagccttttgaggactcttcaccatttcatcatattgtg 42689746  T
Q  113 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 212  Q
     |||||||| ||| ||||  ||||||||||| | |||||| ||||| || ||| | || || |||||||| |||||||| ||||| ||||| || || ||    
T  42689745 cagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggc 42689646  T
Q  213 tgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttt 312  Q
    |||||| ||||||||||| || | ||||| || ||| |  ||| |||  ||||||| ||| ||||||||||||||||||||||| ||||| ||||| ||     
T  42689645 tgaagccgtccatatgatgatagtgcaagcttcaacaagctcttcaagtgtttgcaacttgggccaccatggcttgtctttcaaatcaccatgacctttc 42689546  T
Q  313 tctacagcttccttccaccatttttgaatttcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaa 412  Q
    |||||| |||| |||||||| | |||||  ||||  || ||||  |   | |  ||||||| ||| || |  |||||||| ||||| |||||||| ||||    
T  42689545 tctacaacttctttccaccaatgttgaagctcagaatcatttttgatatcattgtctgttgcataatacactgagacataatcttgtacccatgttttaa 42689446  T
Q  413 tagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtcc 476  Q
    |||    |||||| |||| |||||||||||||||||||||||| |||| |  ||||||||||||    
T  42689445 tagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtcc 42689382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 452
Target Start/End: Original strand, 42692033 - 42692442
Alignment:
Q  43 gtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatattccggagttccttgctccggaataaatcttctac 142  Q
    ||||||||||| |||||||| ||  |||| || |||||||| |||||||| || | ||| |  |||||||  |  |||| ||| || || ||||| ||||    
T  42692033 gtctgaaacttcggtgtaattgtcttcaagtatgccttttgtggacttttgactagctcgttgtattccgctgaccctttctcaggcatgaatctcctac 42692132  T
Q  143 taagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaaga 242  Q
    | |||||||||||||| |  ||  | ||||| || | |||||||||||| ||||| ||||||||||||||||||||| ||||||||| | | | ||||      
T  42692133 tgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaagcaatccatatgacagtagtgcaaac 42692232  T
Q  243 ttgaaccaagtctccaacagtttgcatcttaggccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatt 342  Q
    ||  || |  ||| ||  || ||||||||||||||||||||||| || ||||   |||||||||||    |||||   ||| ||||||||   ||| | |    
T  42692233 ttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagt 42692332  T
Q  343 tcagtgtctttttgcactgcctcatctgttggatagtataaggagacatagtcttggacccatgtcttaatagcatcccatatttctagtccatcaacag 442  Q
    ||||  |||| |   | |   |||||||| |  ||||| ||||||||||||||||| ||||||||||| || ||| ||||||| |||| |||||||  ||    
T  42692333 tcagaatcttgtctaagtatgtcatctgtggtgtagtacaaggagacatagtcttgaacccatgtctttattgcagcccatatctctaatccatcatgag 42692432  T
Q  443 cataagggta 452  Q
    ||||||||||    
T  42692433 cataagggta 42692442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 482
Target Start/End: Complemental strand, 36745746 - 36745652
Alignment:
Q  388 acatagtcttggacccatgtcttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaagacgaagtccatgggg 482  Q
    ||||||||||  ||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||| || | | || |||||||| |||||    
T  36745746 acatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtcttttatcactaggcgaagtccgtgggg 36745652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 36926415 - 36926274
Alignment:
Q  169 cctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattgaaccaagtctccaacagtttgca 268  Q
    |||||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| | ||||| || || ||  ||| | | ||| ||||    
T  36926415 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgca 36926316  T
Q  269 tcttaggccaccatggcttgtctttcaagtcaccgtgaccct 310  Q
    |||| |||||||| ||||  ||||||  |||||| |||||||    
T  36926315 tctttggccaccaaggctcatctttcttgtcaccatgaccct 36926274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 460
Target Start/End: Original strand, 47127110 - 47127155
Alignment:
Q  415 gcatcccatatttctagtccatcaacagcataagggtagtcttcta 460  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||    
T  47127110 gcatcccatatttccaatccatcaacagcaaaagggtagtcttcta 47127155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 47126868 - 47126940
Alignment:
Q  173 cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg 245  Q
    ||||||| || ||||||||||| || |||||||||| ||| |||||   |||||| ||||||| |||||||||    
T  47126868 cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgcaagattg 47126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 46709183 - 46709234
Alignment:
Q  176 aaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatat 227  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| |||||||    
T  46709183 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 46709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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