View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20371_low_7 (Length: 289)
Name: NF20371_low_7
Description: NF20371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20371_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 15333988 - 15334142
Alignment:
| Q |
134 |
gatgaggttaccataaattgctaaagccctgcccataaattaaggatgtttttggtggcaaaccaaccatttacaaaactccacagaaatatcaaaccta |
233 |
Q |
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| T |
15333988 |
gatgaggtttccataaattgctaaagccctgcccataaattaaggatgtttttggtggcaaaccaaccatttacaaaactccacagaaatatcaaaccta |
15334087 |
T |
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| Q |
234 |
agaatcacaagatgttaggaaagatgtcaaaaaatatttttgtctttgtaatggt |
288 |
Q |
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| T |
15334088 |
agaatcacaagatgttaggaaagatgtcacaaaatatttttgtccttgtaatggt |
15334142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 15313953 - 15314039
Alignment:
| Q |
161 |
cctgcccataaattaaggatgtttttggtggcaaaccaaccatttacaaaactccacagaaatatcaaacctaagaatcacaagatgttaggaa |
254 |
Q |
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| T |
15313953 |
cctgcctataaattaaggatgcttttggtg-cata---accatttccaaaactccacagaaatatcaaacct---aatcacaagatgtcaggaa |
15314039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 15333888 - 15333928
Alignment:
| Q |
37 |
aaggaatatcaaaagtaataattaaaatgatttctctaggc |
77 |
Q |
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| T |
15333888 |
aaggaatatcaaaagtaataattataatgatttctctaggc |
15333928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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