View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20372_high_4 (Length: 350)
Name: NF20372_high_4
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20372_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 39780309 - 39779998
Alignment:
| Q |
23 |
gctactctaataagagcataaattgtctctgacttgtcttctaatgaactctataaatgagttgaataggcaacataaatggttgtaatttcttaaggat |
122 |
Q |
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| T |
39780309 |
gctactctaataagagcataaattgtctctgacttgtcttctaatgaactctatacatgagttgaataggcaacataaatggttataatttcttaaggat |
39780210 |
T |
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| Q |
123 |
tttgactaatttaagctttgttatcacctgggaaaggctaatttactagttgattaagtaggaattctttgagtgcatcttctgtggttgtgaaacaccg |
222 |
Q |
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| T |
39780209 |
tttgactaatttaagctttgttatcaccttggaaaggctaatttactagttgattaagtaggaattctttgagtgcatcttctgtgattgtgaaacaccg |
39780110 |
T |
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| Q |
223 |
caaattgttagaacaatgtagagatcttagagatgattatgaacatattttcttattgaaagaagggcttttagttagacaaataatgtgtgtcataaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39780109 |
caaattgttagaacaatgtagagatcttagagatgattatgaacatattttcttattgaaagaagggcttttagttagacaaataatgtgtgtcataaaa |
39780010 |
T |
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| Q |
323 |
ctagacaaaaat |
334 |
Q |
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|||||||||||| |
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| T |
39780009 |
ctagacaaaaat |
39779998 |
T |
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