View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20372_high_6 (Length: 291)

Name: NF20372_high_6
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20372_high_6
NF20372_high_6
[»] chr6 (5 HSPs)
chr6 (11-274)||(34605554-34605817)
chr6 (11-274)||(34726831-34727094)
chr6 (11-274)||(33465942-33466205)
chr6 (11-242)||(34729204-34729436)
chr6 (48-273)||(3047985-3048207)
[»] chr3 (9 HSPs)
chr3 (14-274)||(30858856-30859113)
chr3 (11-273)||(39193329-39193585)
chr3 (48-145)||(38866824-38866921)
chr3 (15-130)||(530084-530199)
chr3 (15-148)||(553029-553162)
chr3 (170-274)||(38866674-38866778)
chr3 (15-148)||(540833-540966)
chr3 (15-148)||(572861-572994)
chr3 (15-122)||(563158-563265)
[»] chr5 (2 HSPs)
chr5 (51-220)||(1204604-1204767)
chr5 (49-141)||(31266471-31266563)
[»] chr4 (2 HSPs)
chr4 (49-146)||(55837869-55837966)
chr4 (49-146)||(55773658-55773755)
[»] chr1 (13 HSPs)
chr1 (18-129)||(40140612-40140723)
chr1 (18-130)||(47873545-47873659)
chr1 (18-107)||(40026861-40026949)
chr1 (18-141)||(48179013-48179136)
chr1 (49-130)||(49440703-49440784)
chr1 (49-136)||(49540823-49540910)
chr1 (49-129)||(2418122-2418203)
chr1 (232-269)||(49540699-49540736)
chr1 (18-133)||(41185658-41185773)
chr1 (49-143)||(37849748-37849842)
chr1 (49-134)||(45196451-45196536)
chr1 (232-269)||(47873737-47873774)
chr1 (232-268)||(41185860-41185896)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 34605554 - 34605817
Alignment:
Q  11 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34605554 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 34605653  T
Q  111 ttttttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaatttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34605654 ttttttagaactgaagagtactcctggtgtaacttctagtcgttattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaatttt 34605753  T
Q  211 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34605754 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 34605817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 34726831 - 34727094
Alignment:
Q  11 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726831 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 34726930  T
Q  111 ttttttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaatttt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34726931 ttttttagaactgaagagtactcctggtgtaacttctagtcgttattggtcacacgtagggttggttagttgtgatggatatcttttagtgcttaatttt 34727030  T
Q  211 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34727031 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 34727094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 33466205 - 33465942
Alignment:
Q  11 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 110  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  33466205 cacacaaggttgttgactttgttgttttaaataatatcatatatgttgtcactgacaaggccaacatagggatgctcagcttgaaatatgcaaatataaa 33466106  T
Q  111 ttttttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaatttt 210  Q
    ||||||||||||||||| |||||||| |||||||||||   | | ||| |||||| || |||||||||| ||||||||||||||||||||| ||||| ||    
T  33466105 ttttttagaactgaagaatactcctgttgtaacttctaccaaatcttgctcacacgtaaggttggttagctgtgatggatatcttttagtgtttaatatt 33466006  T
Q  211 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 274  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33466005 atgtcaaaggtaacatataacgtgtacaagatagacttctctactatggattatgtcaagttgg 33465942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 34729204 - 34729436
Alignment:
Q  11 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 110  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||||    
T  34729204 cacataaggttgttgactttgatgttttaaattatatcatatatgttgtcactgacaaggccaacataaggatactcaatttgaaatatgcaaatataaa 34729303  T
Q  111 -ttttttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaattt 209  Q
     |||||||||||| ||||||||||||||||||||||||| |  || | |||||||| || ||||| ||||||||| ||||||||||| |||||||||| |    
T  34729304 tttttttagaactaaagagtactcctggtgtaacttctactatttctcggtcacacgtaaggttgattagttgtgttggatatctttgagtgcttaatgt 34729403  T
Q  210 tatgtcaaaggtaacgtataacgtgtacaagat 242  Q
    ||||||||||||||| | |||||||||||||||    
T  34729404 tatgtcaaaggtaacttttaacgtgtacaagat 34729436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 273
Target Start/End: Original strand, 3047985 - 3048207
Alignment:
Q  48 catatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttct 147  Q
    |||||||||||||||  |||| |||| |||||||||| ||| |||||| | | |||||||||||||||||||| |||||| ||||  |   |||  || |    
T  3047985 catatatgttgtcaccaacaaagccaacatagggatagtcaacttgaactctacaaatataaattttttagaattgaagactactattcaagtacatttt 3048084  T
Q  148 agtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagact 247  Q
     ||  || ||   ||||| | ||||||||||||||||||||| |||||||||||||| || ||||||| |||||||| | ||| |||||||||||||| |    
T  3048085 -gt--ttcttacgcacacgtcgggttggttagttgtgatggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatt 3048181  T
Q  248 tctctaccatggattatgtcaagttg 273  Q
    |||| |||||||||||||||||||||    
T  3048182 tctcaaccatggattatgtcaagttg 3048207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 30859113 - 30858856
Alignment:
Q  14 agaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattt 113  Q
    |||||||| ||||||||| ||||||  |   || |||||||||||||||||||||||| | |||||||||||| |||||||| | ||||||||||||| |    
T  30859113 agaaggttattgactttgttgttttgcacaataccatatatgttgtcactgacaaggctaacatagggatacttagcttgaactctgcaaatataaatgt 30859014  T
Q  114 tttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaattttatg 213  Q
    |||| |||||||||||||||||| ||||| |||||    || ||  |||||  || |||||||||||||||||||| ||||| ||||||||||||||||     
T  30859013 tttacaactgaagagtactcctgatgtaatttcta---cttcttactcacatgtaaggttggttagttgtgatggacatcttctagtgcttaattttata 30858917  T
Q  214 tcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttgg 274  Q
    || |||| ||| | ||  ||||||||||||||||| || |||||||||||| | |||||||    
T  30858916 tccaaggaaacatttagtgtgtacaagatagacttatcaaccatggattatattaagttgg 30858856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 39193585 - 39193329
Alignment:
Q  11 cacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaa 110  Q
    |||| |||||||||||||||| ||||||  |   || |||||| ||||||||| |||| |||| |||||||||||||| |||||| | ||| |||||||     
T  39193585 cacataaggttgttgactttgttgttttgcacaataccatatacgttgtcactaacaaagccaacatagggatactcaacttgaattctgcgaatataat 39193486  T
Q  111 ttttttagaactgaagagtactcctggtgtaacttctagtcattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaatttt 210  Q
    |||||||||| | |||||||||| | |||||||| || |  ||     ||||||| || || ||||||| ||||||| ||||||||||||||| ||| ||    
T  39193485 ttttttagaattcaagagtactcgtagtgtaactcct-gctat-----gtcacacgtaaggctggttagatgtgatgaatatcttttagtgctgaatatt 39193392  T
Q  211 atgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaagttg 273  Q
    | ||| || | ||  | ||| |||||||||||||| ||||| |||||| ||||||||||||||    
T  39193391 aggtccaatgcaatatttaatgtgtacaagatagatttctcaaccatgaattatgtcaagttg 39193329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 38866921 - 38866824
Alignment:
Q  48 catatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaactt 145  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||||| | |||||||||||| |||||||| ||||||||||||||| |||||||||    
T  38866921 catatatgttatcactgacaaggccaacattgggatactcagtttgaattctgcaaatataaactttttagatctgaagagtactcctagtgtaactt 38866824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 530199 - 530084
Alignment:
Q  15 gaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttt 114  Q
    ||||||||||||||||| ||||||  |   ||  ||||||||||||||||||||||||| ||||||  |||||  |||||| |   |||||||||| |||    
T  530199 gaaggttgttgactttgttgttttgcagaatactatatatgttgtcactgacaaggccaacataggtgtactcgacttgaattccacaaatataaaattt 530100  T
Q  115 ttagaactgaagagta 130  Q
    ||||||||||||||||    
T  530099 ttagaactgaagagta 530084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 553162 - 553029
Alignment:
Q  15 gaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttt 114  Q
    ||||||||||||||||| ||||||  ||  ||  ||||| ||||||||||||||||||| ||||||  ||||   |||||| |   |||||||||| |||    
T  553162 gaaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaatataaaattt 553063  T
Q  115 ttagaactgaagagtactcctggtgtaacttcta 148  Q
    ||||||||||||||||| || | |||||| ||||    
T  553062 ttagaactgaagagtacacccgatgtaacatcta 553029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 38866778 - 38866674
Alignment:
Q  170 ggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaaggtaacgtataacgtgtacaagatagacttctctaccatggattatgtcaa 269  Q
    ||||| ||| |||||||| | ||||||||||||| ||||||| ||| ||  ||| || |||  ||||||||||||||||||| ||||||  |||||||||    
T  38866778 ggttgcttaattgtgatgaacatcttttagtgctaaattttacgtccaacataatgtttaatctgtacaagatagacttctcaaccatgacttatgtcaa 38866679  T
Q  270 gttgg 274  Q
    |||||    
T  38866678 gttgg 38866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 540966 - 540833
Alignment:
Q  15 gaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttt 114  Q
    ||||||||||||||||| ||||||  ||  ||  ||||| ||||||||||||||||||| ||||||  ||||   |||||| |   |||||||||| | |    
T  540966 gaaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaatataaaatat 540867  T
Q  115 ttagaactgaagagtactcctggtgtaacttcta 148  Q
    ||||||||||||||||| || | |||||| ||||    
T  540866 ttagaactgaagagtacacccgatgtaacatcta 540833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 572994 - 572861
Alignment:
Q  15 gaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttt 114  Q
    ||||||||||||||||| ||||||  ||  ||  ||||| ||||||||||||||||||| ||||||  ||||   |||||| |   |||||| |  ||||    
T  572994 gaaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacataggtgtacttgacttgaattccacaaataaatttttt 572895  T
Q  115 ttagaactgaagagtactcctggtgtaacttcta 148  Q
    ||||||||||||||||| || | |||||| ||||    
T  572894 ttagaactgaagagtacacccgatgtaacatcta 572861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 563265 - 563158
Alignment:
Q  15 gaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttt 114  Q
    ||||||||||||||||| ||||||  ||  ||  || || || ||||| ||||||  || ||||||  |||||  |||||| ||||||||||||||||||    
T  563265 gaaggttgttgactttgttgtttttcataatactatttacgtcgtcaccgacaagatcaacataggtgtactcgacttgaattatgcaaatataaatttt 563166  T
Q  115 ttagaact 122  Q
    ||||||||    
T  563165 ttagaact 563158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 1204767 - 1204604
Alignment:
Q  51 atatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttctagt 150  Q
    ||||||||||| |||| |||||| |||||||||  |||||||||  | ||||||||||| |||||| ||| |   ||||||||||||| |||||| || |    
T  1204767 atatgttgtcattgacgaggccaacatagggattgtcagcttgagttctgcaaatataagttttttggaatt---gagtactcctggtataacttttact 1204671  T
Q  151 cattattggtcacacatagggttggttagttgtgatggatatcttttagtgcttaattttatgtcaaagg 220  Q
    | |||    |||||| || || ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  1204670 cctta---ctcacacgtaaggctggttagttgtgatggacatcttttagtgcttaattttatgtccaagg 1204604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 31266471 - 31266563
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgta 141  Q
    ||||||||||||||| ||||||||| ||||||| |||| |||||||| | | ||||||| |  ||| || ||||||| |||||||||| ||||    
T  31266471 atatatgttgtcactcacaaggccaacataggggtacttagcttgaattctacaaatattatatttctaaaactgaaaagtactcctgatgta 31266563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 55837869 - 55837966
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttc 146  Q
    |||||||||||||  |||||||||| |||||||||||||| ||| || | |||||||||||| ||||||||| ||||||||| |||| | ||||||||    
T  55837869 atatatgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatataaagtttttagaaatgaagagtattcctagcgtaacttc 55837966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 55773658 - 55773755
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaacttc 146  Q
    |||||||||||||  |||||||||| |||||||||||||| ||| || | ||||||||| || ||||||||| ||||| ||| |||| | ||||||||    
T  55773658 atatatgttgtcaacgacaaggccaacatagggatactcaacttaaattctgcaaatattaagtttttagaaatgaagtgtattcctagcgtaacttc 55773755  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 40140612 - 40140723
Alignment:
Q  18 ggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttttta 117  Q
    |||||||||||||   |||||| ||  ||| ||||||||||||||||||||||||| ||||||| |||| |||||||| | |||| |||| || ||| ||    
T  40140612 ggttgttgactttatggttttacataatataatatatgttgtcactgacaaggccaacataggggtacttagcttgaattctgcagatattaaatttcta 40140711  T
Q  118 gaactgaagagt 129  Q
     |||||||||||    
T  40140712 aaactgaagagt 40140723  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 47873545 - 47873659
Alignment:
Q  18 ggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcata--gggatactcagcttgaaatatgcaaatataaattttt 115  Q
    ||||||||||||||  |||||  ||  ||| ||||||||||||||||||||||||| ||||  ||| ||||||||||||| | ||||||||| || |||     
T  47873545 ggttgttgactttgtagttttgcataatatgatatatgttgtcactgacaaggccaacataggggggtactcagcttgaattctgcaaatattaaatttc 47873644  T
Q  116 tagaactgaagagta 130  Q
    || ||||||||||||    
T  47873645 taaaactgaagagta 47873659  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 40026861 - 40026949
Alignment:
Q  18 ggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatat 107  Q
    ||||||||||||||  |||||  ||  ||| ||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||    
T  40026861 ggttgttgactttgtggttttgcataatataatatatgttgtcactgacaaggcca-cataggggtactcagcttgaattctgcaaatat 40026949  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 48179013 - 48179136
Alignment:
Q  18 ggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaatttttta 117  Q
    ||||||||||||||  |||||  ||  ||| ||||||||||||||| |||| |||| ||||||| | |||  |||||| ||||||||||| || ||| ||    
T  48179013 ggttgttgactttgtagttttgcataatataatatatgttgtcactaacaatgccaacataggggtcctcgacttgaattatgcaaatattaaatttcta 48179112  T
Q  118 gaactgaagagtactcctggtgta 141  Q
     | |||||||||||||||| ||||    
T  48179113 aagctgaagagtactcctgatgta 48179136  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 49440784 - 49440703
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagta 130  Q
    |||||||| |||||||||||||||| ||| ||| ||||||||||||| |  |||||||| || ||| || ||||||||||||    
T  49440784 atatatgtagtcactgacaaggccaacattggggtactcagcttgaattcagcaaatattaaatttctaaaactgaagagta 49440703  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 49540910 - 49540823
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctg 136  Q
    ||||||||||||||| |||||  || ||||||| |||||| |||||| | ||||||||| || |||| | |||| |||||||||||||    
T  49540910 atatatgttgtcactaacaagttcaacataggggtactcaacttgaattctgcaaatattaaattttcaaaactaaagagtactcctg 49540823  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 2418203 - 2418122
Alignment:
Q  49 atatatgttgtcactgacaaggccagcata-gggatactcagcttgaaatatgcaaatataaattttttagaactgaagagt 129  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||||||||| | |||| |||| || ||| || |||||||||||    
T  2418203 atatatgttgttactgacaaggccaacatagggggtactcagcttgaattctgcagatattaaatttctaaaactgaagagt 2418122  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 49540736 - 49540699
Alignment:
Q  232 gtgtacaagatagacttctctaccatggattatgtcaa 269  Q
    |||||||||||||||||||| |||||||||||||||||    
T  49540736 gtgtacaagatagacttctcaaccatggattatgtcaa 49540699  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 41185658 - 41185773
Alignment:
Q  18 ggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaata-taaatttttt 116  Q
    ||||||||||||||  |||||| ||  ||| ||||||||  ||||| |||||||||  |||||| |||| |||||||| | |||||||| ||||||| ||    
T  41185658 ggttgttgactttgtggttttacatgatataatatatgtcatcactaacaaggccaagataggggtactgagcttgaattctgcaaatattaaatttctt 41185757  T
Q  117 agaactgaagagtactc 133  Q
    | |||||| ||||||||    
T  41185758 a-aactgaggagtactc 41185773  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 37849748 - 37849842
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcctggtgtaac 143  Q
    |||| |||||||||| ||||||||| ||||||| |||| | | |||| | || |||||| || ||| || |||||||||||||||| | ||||||    
T  37849748 atatttgttgtcactaacaaggccaacataggggtacttaacctgaattttgaaaatattaaatttctaaaactgaagagtactcccgatgtaac 37849842  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 45196451 - 45196536
Alignment:
Q  49 atatatgttgtcactgacaaggccagcatagggatactcagcttgaaatatgcaaatataaattttttagaactgaagagtactcc 134  Q
    ||||||||||||||  ||| ||||| ||||||| |||||||||| || | ||||||| | || ||| || ||||||| ||||||||    
T  45196451 atatatgttgtcaccaacatggccaacataggggtactcagcttaaattctgcaaatgttaaatttctaaaactgaaaagtactcc 45196536  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 47873737 - 47873774
Alignment:
Q  232 gtgtacaagatagacttctctaccatggattatgtcaa 269  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  47873737 gtgtacaagatagacttctcaaccatgaattatgtcaa 47873774  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 41185860 - 41185896
Alignment:
Q  232 gtgtacaagatagacttctctaccatggattatgtca 268  Q
    |||||||||||||||||||| |||||| |||||||||    
T  41185860 gtgtacaagatagacttctcaaccatgaattatgtca 41185896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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