View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20372_high_7 (Length: 275)
Name: NF20372_high_7
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20372_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 28106888 - 28106641
Alignment:
| Q |
14 |
tattctccatcaaacagtacctaacacctacaacgcaattgaccaactccacaagatnnnnnnntaaacaaattttaaacaagaatttttctatttatat |
113 |
Q |
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| T |
28106888 |
tattctccatcaaacagtacctaacacctacaacacaattgactaactccacaagagaaaaaaataaacaaattttaaacaagaatttttctatttatat |
28106789 |
T |
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| Q |
114 |
acaactatacatggaaggaaaagccacaacaagaatccactgaaaatgtctaagcaaaatgtgcttgtgatgatacttctaataagtgctatacttccac |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28106788 |
acagctatacatggaaggaaaagccacaacaagaatccaatgaaaatgtctaagcaaaatgtgcttgtgatgatacttctaataagtgctatacttccac |
28106689 |
T |
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| Q |
214 |
caccaattcatagcttgaatttaaaagcagggaattggggtgaaactt |
261 |
Q |
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| T |
28106688 |
caccaattcatagcttgaatttaaaagcagggaattggggtgaaactt |
28106641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 28126545 - 28126447
Alignment:
| Q |
156 |
aaaatgtctaagcaaaatgtgcttgtgatgatacttctaataagtgctatacttccaccaccaattcatagcttgaatttaaaagcagggaattggggt |
254 |
Q |
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||||||||||||||||||||||||||||| || ||| |||| |||||||| ||| ||| ||||||||| |||||| |||| |||||||||||||||||| |
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| T |
28126545 |
aaaatgtctaagcaaaatgtgcttgtgattatgcttataatgagtgctattctttcactaccaattcaaagcttggatttgaaagcagggaattggggt |
28126447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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