View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20372_low_3 (Length: 485)
Name: NF20372_low_3
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20372_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Original strand, 21242727 - 21243191
Alignment:
| Q |
16 |
caaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242727 |
caaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgta |
21242826 |
T |
|
| Q |
116 |
ctcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21242827 |
ctcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggg |
21242926 |
T |
|
| Q |
216 |
gaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggttt |
315 |
Q |
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| T |
21242927 |
gaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggttt |
21243026 |
T |
|
| Q |
316 |
cgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243027 |
cgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaa |
21243126 |
T |
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| Q |
416 |
acaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtct-gtgctgctcctc |
479 |
Q |
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| T |
21243127 |
acagagtgtggttgggaaatatgatgtttcttctttgaagagtattgggtctggtgctgctcctc |
21243191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 21258505 - 21258939
Alignment:
| Q |
18 |
aacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtact |
117 |
Q |
| |
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||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | | ||||||||||| || | |||| |||||| |
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| T |
21258505 |
aacttcacgagttttgaggcgttgatagaatcagctggggaagtaacagaaataccagaaagcaacgtgaaacagactgaca-------acttctgtact |
21258597 |
T |
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| Q |
118 |
catcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctgggga |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
21258598 |
catcaggaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgataaacatggatgatgatttagcagggga |
21258697 |
T |
|
| Q |
218 |
attaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcg |
317 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
21258698 |
attaaat---gtgttcctctgcgttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcagctaaggagaggaagtgcggtggtttca |
21258794 |
T |
|
| Q |
318 |
atggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaac |
417 |
Q |
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| |||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
21258795 |
acggggagatttgagttagaggg-tttttgaaggtgattgaaaagtatagagtgacaactttgtgggttgtgccatcgatgaatcttgctttggcgaaac |
21258893 |
T |
|
| Q |
418 |
aaagtgtggttgggaaatatgatgtttcttctctgaagagtattgg |
463 |
Q |
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| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21258894 |
agagtgtggttgggaaatatgatgtttcttcgttgaagagtattgg |
21258939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 21253987 - 21254357
Alignment:
| Q |
16 |
caaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgta |
115 |
Q |
| |
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||||||||| ||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||| |
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| T |
21253987 |
caaacttcaccagttttgagtcgttgattgaaacagcatgagaagtaacagaattaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgta |
21254086 |
T |
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| Q |
116 |
ctcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggg |
215 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||| || || ||||||||| |||| || | |||| ||||| |||||||| ||||||||||| ||| |
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| T |
21254087 |
ctcatcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaacatggacgatgatttagcaggg |
21254186 |
T |
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| Q |
216 |
gaattaaacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtgg |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
21254187 |
gaattaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagctaaggagaggaagtacggtgg |
21254286 |
T |
|
| Q |
313 |
tttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtggg |
384 |
Q |
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|||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||| |
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| T |
21254287 |
tttcaacggggaggtttgagttagaggg-tttttgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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