View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20372_low_4 (Length: 415)
Name: NF20372_low_4
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20372_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 7063964 - 7063572
Alignment:
| Q |
13 |
actcactcattgaattcagataagttcagaagaccatcaccatctacatctgatgcattaaaatgctcttcttccaacagcctcatatcgtaaccaaaag |
112 |
Q |
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| T |
7063964 |
actcactcattgaattcagctaagttcagaagaccatcaccatctacatctgatgcattaaaatgctcttcttccaacagcctcaaatcgtaaccaaaag |
7063865 |
T |
|
| Q |
113 |
gatcacctgtagtgggagtggaaagaccgaactcggagaaggaaacaaaaccatcgcgattcttatcataaacaaccatctccttctggctgtgatgcaa |
212 |
Q |
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| T |
7063864 |
gatcacctgtagtgggagtgaaaagaccgaactcggagaaggaaacaaaaccatcgcgattcttatcataaacaaccatctccttctggctgtgatgcaa |
7063765 |
T |
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| Q |
213 |
aatctgtcgttggacatgatgaacgttccactgagtcaattcgtgaacggagacaaactgatcagtggggtccacatcgatttcagggaagaggcgggcg |
312 |
Q |
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| T |
7063764 |
aatctgtcgttggacatgatgaacgttccactgagtcaattcctgaacggagacaaactgatcagtggggtccacatcgatttcagggaagaggcgggcg |
7063665 |
T |
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| Q |
313 |
attctgttggtaacattgaac---------tcccactcggcagaagggtgaatctgttgttgtttgttatgagtgcgggagaggagaaagagg |
396 |
Q |
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| T |
7063664 |
attctgttagtgacattgaactcatcctcatcccactcggcagaagggtgaatctgttgttgtttgttatgagtgcgggagaggagaaagagg |
7063572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 51813026 - 51812952
Alignment:
| Q |
11 |
aaactcactcattgaattcagataagttcagaagaccatcaccatctacatctgatgcattaaaatgctcttctt |
85 |
Q |
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|||||||||||||||| |||| |||||| |||| |||||| |||||| |||| |||||||||||||||||||||| |
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| T |
51813026 |
aaactcactcattgaactcagttaagttaagaacaccatctccatctgcatcagatgcattaaaatgctcttctt |
51812952 |
T |
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