View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20372_low_6 (Length: 368)

Name: NF20372_low_6
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20372_low_6
NF20372_low_6
[»] chr4 (4 HSPs)
chr4 (18-351)||(51009154-51009498)
chr4 (165-210)||(31339578-31339623)
chr4 (165-210)||(28497531-28497576)
chr4 (214-266)||(26356721-26356773)
[»] chr7 (7 HSPs)
chr7 (30-154)||(38739290-38739414)
chr7 (227-283)||(14593875-14593931)
chr7 (214-277)||(28628050-28628113)
chr7 (218-281)||(42177131-42177194)
chr7 (180-209)||(38739420-38739449)
chr7 (242-274)||(7189340-7189372)
chr7 (227-283)||(16013398-16013454)
[»] chr2 (4 HSPs)
chr2 (214-281)||(26784453-26784520)
chr2 (214-281)||(19235097-19235164)
chr2 (213-275)||(4481589-4481651)
chr2 (214-328)||(43832200-43832314)
[»] chr1 (7 HSPs)
chr1 (214-279)||(33560973-33561038)
chr1 (214-282)||(50771668-50771736)
chr1 (214-281)||(42501210-42501277)
chr1 (214-283)||(12261824-12261893)
chr1 (213-282)||(50806770-50806839)
chr1 (227-280)||(51584859-51584912)
chr1 (218-266)||(6025711-6025759)
[»] chr8 (5 HSPs)
chr8 (218-282)||(25985624-25985688)
chr8 (214-278)||(38178376-38178440)
chr8 (214-281)||(4011185-4011252)
chr8 (214-283)||(2216390-2216459)
chr8 (165-281)||(79085-79196)
[»] chr5 (2 HSPs)
chr5 (227-282)||(33667550-33667605)
chr5 (214-282)||(14749409-14749477)
[»] chr3 (4 HSPs)
chr3 (214-281)||(37228184-37228251)
chr3 (220-281)||(31261055-31261116)
chr3 (165-210)||(42026731-42026776)
chr3 (214-282)||(22902900-22902968)
[»] chr6 (1 HSPs)
chr6 (213-282)||(10617346-10617415)
[»] scaffold0018 (1 HSPs)
scaffold0018 (229-281)||(178533-178585)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 51009498 - 51009154
Alignment:
Q  18 ctaattattctgaatattcaacatcatcattgtaatttataatgtttttatttaggtcaatgaaatttctggtttttgtgtcatacttttaaaagtcaac 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  51009498 ctaattattcagaatattcaacatcatcattgtaatttataatgtttttatttaggtgaatgaaatttctggtttttgtgtcatacttttaaaagtctac 51009399  T
Q  118 ctattaaatttgtcaattttgtatgtgttgagatggaaactcgtatcaggtggtttgagctggtagagagaagtcttgtagattatgtagtaatga---- 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        
T  51009398 ctattaaatttgtcaattttgtatgtgttgtgatggaaactcgtatcaggtggtttgagctggtagagagaattcttgtagattatgtagtaatgagagt 51009299  T
Q  214 -------atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaagagtggtgagattaatgaaatggat 306  Q
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  51009298 tgataagatggagggtagttaaatcactagacgtggaggaagaccgagaaaaactttaagggaaactattaagaagagtgttgagattaatgaaatggat 51009199  T
Q  307 aaagatatgatgcatgatagaatgttactgcgttgctcaattcat 351  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  51009198 aaagatatgatgcatgatagaatgttaccgcgttgctcaattcat 51009154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 31339578 - 31339623
Alignment:
Q  165 aggtggtttgagctggtagagagaagtcttgtagattatgtagtaa 210  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||    
T  31339578 aggtggtttgagcatgtagagagaagacttgtagattatgtagtaa 31339623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 28497531 - 28497576
Alignment:
Q  165 aggtggtttgagctggtagagagaagtcttgtagattatgtagtaa 210  Q
    |||||||||| ||  ||||||||||| |||||||||||||||||||    
T  28497531 aggtggtttgggcatgtagagagaagacttgtagattatgtagtaa 28497576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 26356721 - 26356773
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataag 266  Q
    |||||||| ||| ||||||||||| || | |||||||| ||||||||||||||    
T  26356721 atggaggggagtcaaatcactagaggtaggggaagacctagaaaaactataag 26356773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 38739290 - 38739414
Alignment:
Q  30 aatattcaacatcatcattgtaatttataatgtttttatttaggtcaatgaaatttctggtttttgtgtcatacttttaaaagtcaacctattaaatttg 129  Q
    |||| |||||||  ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  38739290 aatagtcaacattgtcattataatttataatgtttttattttggtaaatgaaaattctggtttttgtgtcatac-tttaaaagtcaacctataaaatttg 38739388  T
Q  130 tcaattttgtatgtg-ttgagatgga 154  Q
    ||||||||||||||| ||||||||||    
T  38739389 tcaattttgtatgtgtttgagatgga 38739414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 14593875 - 14593931
Alignment:
Q  227 aaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaaga 283  Q
    ||||||||||| || | |||||||| |||||||||||||| ||| ||||||||||||    
T  14593875 aaatcactagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 14593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 28628113 - 28628050
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctatta 277  Q
    ||||||| |||| ||||||| ||| || |||||||||| |||||||||||||| ||| ||||||    
T  28628113 atggaggatagtcaaatcacaagaggtagaggaagacctagaaaaactataagagaaactatta 28628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 42177194 - 42177131
Alignment:
Q  218 agggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||||| |||||| |||| ||||||||||||  |||||| ||||||| ||| ||||||||||    
T  42177194 agggtagtcaaatcattagaggtggaggaagacgtagaaaacctataagagaatctattaagaa 42177131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 38739420 - 38739449
Alignment:
Q  180 gtagagagaagtcttgtagattatgtagta 209  Q
    ||||||||||||||||||||||||||||||    
T  38739420 gtagagagaagtcttgtagattatgtagta 38739449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 7189372 - 7189340
Alignment:
Q  242 gaggaagaccgagaaaaactataagggaagcta 274  Q
    |||||||||| ||||||||||||||||||||||    
T  7189372 gaggaagacctagaaaaactataagggaagcta 7189340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 16013398 - 16013454
Alignment:
Q  227 aaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaaga 283  Q
    ||||||| ||| || | |||||||| |||||||||||||| ||| ||||||||||||    
T  16013398 aaatcaccagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 16013454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 26784520 - 26784453
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||||||||| ||||||||||| |  ||| |||||| |||||||||||||| ||| ||||||||||    
T  26784520 atggagggtagtcaaatcactagaggcagagaaagacctagaaaaactataagagaaactattaagaa 26784453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 19235164 - 19235097
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||||| ||| |||||||||||  | |||||||||| |||||||||||||| ||| ||||| ||||    
T  19235164 atggaggggagtcaaatcactagagatagaggaagacctagaaaaactataagagaaactattgagaa 19235097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 4481589 - 4481651
Alignment:
Q  213 aatggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctat 275  Q
    ||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||||| ||| ||||    
T  4481589 aatggagggtagtcaaaccgctagaggtggaggaagacctagaaaaattataagagaaactat 4481651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 43832200 - 43832314
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaagagtggtgagattaatgaaatggataaagata 313  Q
    |||||| ||| | |||||| ||||||  |||||||||| | | |||||||||| ||| |||||||||||  |   |||||||||||  ||||||| ||||    
T  43832200 atggagagtaatcaaatcagtagacgcagaggaagacctaaacaaactataagagaaactattaagaaggatctagagattaatgagttggataaggata 43832299  T
Q  314 tgatgcatgatagaa 328  Q
    ||||| || ||||||    
T  43832300 tgatgtattatagaa 43832314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 33561038 - 33560973
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaag 279  Q
    |||||||||||| ||||||||||| |  ||||||| || ||||||||| |||||||| ||||||||    
T  33561038 atggagggtagtcaaatcactagaggcagaggaagtcctagaaaaactgtaagggaaactattaag 33560973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 50771736 - 50771668
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    |||||||| ||| |||| |||||| || | |||||||| |||||||||||||| ||| |||||||||||    
T  50771736 atggaggggagtcaaatgactagaggtaggggaagacctagaaaaactataagcgaaactattaagaag 50771668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 42501210 - 42501277
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||||||||| |||||| |||| || |||||| ||| |||||||||||||| |||  |||||||||    
T  42501210 atggagggtagtcaaatcattagaggtagaggaaaacctagaaaaactataagagaaattattaagaa 42501277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 12261893 - 12261824
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaaga 283  Q
    |||||||  ||| ||||||||||| |||| | |||||| |||||||||||||| ||| ||| ||||||||    
T  12261893 atggaggagagtcaaatcactagaggtggggtaagacctagaaaaactataagagaaactagtaagaaga 12261824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 50806770 - 50806839
Alignment:
Q  213 aatggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    ||||||||| ||| ||||||||||| || || ||||||| |||||||| ||||| ||| |||| ||||||    
T  50806770 aatggaggggagtcaaatcactagaagtagatgaagacctagaaaaacaataagagaaactatcaagaag 50806839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 51584859 - 51584912
Alignment:
Q  227 aaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaaga 280  Q
    ||||||||||| || | |||||||| |||||||||||||| ||| |||||||||    
T  51584859 aaatcactagaggtaggggaagacctagaaaaactataagagaaactattaaga 51584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 6025711 - 6025759
Alignment:
Q  218 agggtagttaaatcactagacgtggaggaagaccgagaaaaactataag 266  Q
    |||||||| ||||||||||| |  |||||||||| ||||||||||||||    
T  6025711 agggtagtcaaatcactagaggcagaggaagacctagaaaaactataag 6025759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 25985624 - 25985688
Alignment:
Q  218 agggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    |||| ||| ||||||||||| || |||||||||| |||||||||| | ||||| |||||||||||    
T  25985624 aggggagtcaaatcactagaggtagaggaagacctagaaaaactaaatgggaaactattaagaag 25985688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 38178440 - 38178376
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaa 278  Q
    ||||||| |||| ||||| ||||| || |||||||||| |||||||||||||| ||| |||||||    
T  38178440 atggaggatagtcaaatcgctagaggtagaggaagacctagaaaaactataagagaaactattaa 38178376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 4011185 - 4011252
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||| ||||||||||||| |||||    |||||||||| |||||||||||||| ||| ||||||||||    
T  4011185 atggtgggtagttaaatcgctagagacagaggaagacctagaaaaactataagagaaactattaagaa 4011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 2216390 - 2216459
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaaga 283  Q
    ||||||| |||| | ||||||||| || |||||||||| |||||||  ||||| ||| ||||||||||||    
T  2216390 atggaggatagtcagatcactagaggtagaggaagacctagaaaaaacataagagaaactattaagaaga 2216459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 281
Target Start/End: Original strand, 79085 - 79196
Alignment:
Q  165 aggtggtttgagctggtagagagaagtcttgtagattatgtagtaatgaatggagggtagttaaatcactagacgtggaggaagaccgagaaaaactata 264  Q
    |||||||||| ||  ||| ||||||| | |||||||| ||||||||     |||||||||| ||||||||||| |  ||||||| |  ||||| ||||||    
T  79085 aggtggtttgggcatgtatagagaagacctgtagattttgtagtaa-----ggagggtagtcaaatcactagaagcagaggaaggcttagaaacactata 79179  T
Q  265 agggaagctattaagaa 281  Q
    || ||| ||||||||||    
T  79180 agagaaactattaagaa 79196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 33667550 - 33667605
Alignment:
Q  227 aaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    ||||||||||| || | |||||||| |||||||||||||| |||| ||||||||||    
T  33667550 aaatcactagatgtaggggaagacctagaaaaactataagagaagttattaagaag 33667605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 14749409 - 14749477
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    |||||||| ||| ||||||||| | |  |||||||||| |||||||||||||| ||| |||| ||||||    
T  14749409 atggaggggagtcaaatcactaaaggcagaggaagacctagaaaaactataagagaaactatcaagaag 14749477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 37228184 - 37228251
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||||||||| ||||||||||| |  ||| |||||| | |||||| ||||||||| ||||||||||    
T  37228184 atggagggtagtcaaatcactagaggcagagaaagacctataaaaacgataagggaaactattaagaa 37228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 31261116 - 31261055
Alignment:
Q  220 ggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    |||||| ||||||||||| |  |||||||||| |||||||||||||| ||| |||| |||||    
T  31261116 ggtagtcaaatcactagaggcagaggaagacctagaaaaactataagagaaactatcaagaa 31261055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 42026776 - 42026731
Alignment:
Q  165 aggtggtttgagctggtagagagaagtcttgtagattatgtagtaa 210  Q
    |||||||||||||| ||||||||||  |||||||||||| ||||||    
T  42026776 aggtggtttgagcttgtagagagaaaacttgtagattatttagtaa 42026731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 22902900 - 22902968
Alignment:
Q  214 atggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    |||||||| ||||||||||||||| || | ||||||   |||||||| ||||| |||||||| ||||||    
T  22902900 atggaggggagttaaatcactagatgtaggggaagatatagaaaaaccataagagaagctataaagaag 22902968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 10617415 - 10617346
Alignment:
Q  213 aatggagggtagttaaatcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaag 282  Q
    ||||||||| ||| ||||||||||| || || ||| ||| |||||||||||||| ||| | |||||||||    
T  10617415 aatggaggggagtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaag 10617346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 178585 - 178533
Alignment:
Q  229 atcactagacgtggaggaagaccgagaaaaactataagggaagctattaagaa 281  Q
    ||||||||| | |||| |||||| |||||||||||||| ||| ||||||||||    
T  178585 atcactagaggcggagtaagacctagaaaaactataagagaaactattaagaa 178533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University