View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20372_low_7 (Length: 352)
Name: NF20372_low_7
Description: NF20372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20372_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 35678917 - 35678603
Alignment:
| Q |
19 |
attacgtctggacatgcaacatatgtttctatcatccatgccatgttcgccatcgtaataatttaacaggaggactaaattgaacaacgccttacaacat |
118 |
Q |
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| T |
35678917 |
attacgtctggacatgcaacatatgtttctatcatccatgtcatgttcgccatcgtaataatttaacaggaggactaaattgaacaacgccttacaacat |
35678818 |
T |
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| Q |
119 |
cacatacctttatttctattggcaaatttgagagatcaaattaacatcccctaacaatttcaaaaactaaattgatgctttacttgaactaaatttgttc |
218 |
Q |
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| T |
35678817 |
cacatacctttatttctattggcaaatttgagagatcaaattaacatcccctaacaatttcaaaaactaaattgatgctttacttgaactaaatttgttc |
35678718 |
T |
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| Q |
219 |
aaagttcaaacatcaatatacattattcaataacatataagtattaaaccacactttcaaacaactttacctttattttataatataataatgccattct |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35678717 |
aaagttcaaacatcaatatacatcattcaataacatataagtattaaaccacactttcaaacaattttacctttattttataatataataatgccattct |
35678618 |
T |
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| Q |
319 |
tgctattttaactgt |
333 |
Q |
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||||||||||||||| |
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| T |
35678617 |
tgctattttaactgt |
35678603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 35650626 - 35650578
Alignment:
| Q |
205 |
aactaaatttgttcaaagttcaaacatcaatatacattattcaataaca |
253 |
Q |
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|||||||||||| |||||||||||||| |||||||||| |||||||||| |
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| T |
35650626 |
aactaaatttgtacaaagttcaaacattaatatacattgttcaataaca |
35650578 |
T |
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