View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_high_2 (Length: 419)
Name: NF20373_high_2
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 25044307 - 25043905
Alignment:
| Q |
1 |
ctgtacccttttgatgtttatcatttactcaacaaatcgatggtactaagcctataaagaactatgaatagggtcttttttctatggcttttatgaattt |
100 |
Q |
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| T |
25044307 |
ctgtacccttttaatgtttatcgtttactcaacaaattgatggtactaagcctataaagaactatgaatagagtcttttttctatagcttttatgaattt |
25044208 |
T |
|
| Q |
101 |
atgttagttttaaggtttgtgtgtattattctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattca |
200 |
Q |
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| T |
25044207 |
atgttagttttaaggtttgtgtgtattattctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattca |
25044108 |
T |
|
| Q |
201 |
gca-------aaaaacaaaaaacaattttaagttttatgaattttgttctgtca---------nnnnnnnnnnnatattttatattgaatttgattcaaa |
284 |
Q |
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||| |||| |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
25044107 |
gcaaaaaccaaaaaccaaaaaccaattttaagttttatgaattttgttctgtcatttttttttttattttttttatatttcatattgaatttgattcaaa |
25044008 |
T |
|
| Q |
285 |
tctttatatacactatcctcgttaaagcatgtgactttgtgagttcctttatataaccatgcaccataatcacataatctttatataaccattagacccc |
384 |
Q |
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| T |
25044007 |
tctttatatacactatcctcgttaaagcatacgactttgtgagttcctttatataaccatgcagcataatcacataatctttatataaccattagacccc |
25043908 |
T |
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| Q |
385 |
ctt |
387 |
Q |
| |
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||| |
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| T |
25043907 |
ctt |
25043905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 28649781 - 28649464
Alignment:
| Q |
4 |
tacccttttgatgtttatcatttactcaacaaatcgatggtactaagcctataaagaactatgaatagggtcttttttctatggcttttatgaatttatg |
103 |
Q |
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||||||||||||||||||| ||| |||||||||| | |||||| ||||||||||||||||||| |||||||| |||| ||||||| |||||||| |
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| T |
28649781 |
tacccttttgatgtttatcgtttgctcaacaaattggcagtactatacctataaagaactatgaatgtggtctttt--ctatttcttttataaatttatg |
28649684 |
T |
|
| Q |
104 |
ttagttttaaggtttgtgtgtattattctaatt-gaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtattcagc |
202 |
Q |
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||||||||||||||||||||||| ||||||||| | ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
28649683 |
ttagttttaaggtttgtgtgtataattctaatttgcagactccatgaattcgcttatagtatggattatggaaatgtataattttccttatgaatttagc |
28649584 |
T |
|
| Q |
203 |
aaaaaacaaaaaacaattttaagttttatgaattttgttctgtcannnnnnnnnnnatattttatattgaatttgattcaaatctttatatacactatcc |
302 |
Q |
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| T |
28649583 |
---------aaaacaattttaaattttatgaattttgttctgtca-----ttttttatgtttcatattgaatatgattcaaatttatatatacactctcc |
28649498 |
T |
|
| Q |
303 |
tcgttaaagcatgtgactttgtgagttcctttat |
336 |
Q |
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|| | |||||||| |||||||||||||||||||| |
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| T |
28649497 |
tcatcaaagcatgcgactttgtgagttcctttat |
28649464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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