View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_high_3 (Length: 410)
Name: NF20373_high_3
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 22795285 - 22794898
Alignment:
| Q |
18 |
ctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctgttcatcattgaagcttt |
117 |
Q |
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| T |
22795285 |
ctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctgttcatcattgaagcttt |
22795186 |
T |
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| Q |
118 |
cattgtttgacaaacttttccttatgaacctgcagaagcatgta--tacaaattgctcatgacattgaatacgagcaaaaagaaaacacatat--ttttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22795185 |
cattgtttgacaaacttttccttatgaacctgcagaagaaaacacatacaaaatgctcatgacattgaatacgagcaaaaagaaaacacatatatttttt |
22795086 |
T |
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| Q |
214 |
caaactaaaaagacgagtagttggaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttcaggggtctcagtgatggg |
313 |
Q |
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| T |
22795085 |
caaactaaaaagatgagtagttgtaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttcaggggtctcagtgatggg |
22794986 |
T |
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| Q |
314 |
atgcattgaattaaaatgagtatctcctc---ctccagaatgtgatttgcgtcgaaatgaaggcaaagtactctcggattttcttctc |
398 |
Q |
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| T |
22794985 |
atgcattgaattaaaatgagtatctcctcctcctccagaatgtgatttgcgtcgaaatgaaggcaaagtactctcggattttcttctc |
22794898 |
T |
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