View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20373_high_5 (Length: 310)

Name: NF20373_high_5
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20373_high_5
NF20373_high_5
[»] chr2 (1 HSPs)
chr2 (1-295)||(38125978-38126267)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 38126267 - 38125978
Alignment:
Q  1 ccataaataagttaaaaggattttatgtctaatagtaacaagcattacaagcaatgaatacaaacaataatgaccagtatagtatacctcaacgacagat 100  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||     |||||||||||||||||||||    
T  38126267 ccataaataaattaaaaggattttatgtctaatagtaataagcattacaagcaatgaatacagacaataatgac-----tagtatacctcaacgacagat 38126173  T
Q  101 atgttatttaaaagatcataaaactcttctaagagttgcttctcttgtgtaataacttttgccaattctgatagtattgcagcagtttggtcaacctgtt 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38126172 atgttatgtaaaagatcataaaactcttctaagagttgcttctcttgtgtaacaacttttgccaattctgatagtattgcagcagtttggtcaacctgtt 38126073  T
Q  201 gacagataaatttttccacatgaatgcagccctcatagatagcaaaagagaaatgatatctcgacacaaaatttgacaacaatttggattgttaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38126072 gacagataaatttttccacatgaatgcagccctcatagatagcaaaagagaaatgatatctcgacacaaaatttgacaacaatttggattgttaa 38125978  T

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