View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20373_high_8 (Length: 250)
Name: NF20373_high_8
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 31630314 - 31630525
Alignment:
| Q |
26 |
tagtatgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31630314 |
tagtatgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaa |
31630413 |
T |
|
| Q |
126 |
gttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31630414 |
gttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaag |
31630513 |
T |
|
| Q |
226 |
tgacttcatctc |
237 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31630514 |
tgacttcatctc |
31630525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 31656659 - 31656865
Alignment:
| Q |
26 |
tagtatgttatttttcatcatatacttaaa-caaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatga |
124 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
31656659 |
tagtatgttatttttcacccaatacttaaaacaaccattacttgagccgtgtttcacaatatgcagagcatggcgaaagctttaatgttctccattatga |
31656758 |
T |
|
| Q |
125 |
agttggacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaa |
224 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |||| | || |||| | ||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31656759 |
agttggacaaaagtatgaacctcattatgactactttttggatacgtttagtactaggcatgcaggtcagcgcatagcaacaatgctgatgtacctgtaa |
31656858 |
T |
|
| Q |
225 |
gtgactt |
231 |
Q |
| |
|
||||||| |
|
|
| T |
31656859 |
gtgactt |
31656865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 31651880 - 31652060
Alignment:
| Q |
49 |
acttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgatcctca |
148 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| ||||||||| | || |||| |||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
31651880 |
acttaaacaaccattacttgaactgtgtttcacaatatgcagagcatggtgaaaactttaatgttctccattatgaagttggacaaaagtatgaacctca |
31651979 |
T |
|
| Q |
149 |
tttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagtgac |
229 |
Q |
| |
|
|| ||||||||| |||| || || |||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31651980 |
ttatgactactttatggatacttttagtactacatatgcgggtcagcgtatagcaacaatgctgatgtacctgtaagtgac |
31652060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 31646329 - 31646525
Alignment:
| Q |
30 |
atgttatttttcatcatatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttg |
129 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| || || ||||||||| ||||||||||| ||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
31646329 |
atgttatatttcatcatatatttaaacaaccattaatttggctatgtttcacaatatgcagagaatggcgaaagcgttaatattctccattatgaagttg |
31646428 |
T |
|
| Q |
130 |
gacaaaagtatgatcctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagt |
226 |
Q |
| |
|
|||||||||| || |||||| || | |||| | ||||| ||||||| ||| || ||| ||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
31646429 |
gacaaaagtacgaacctcatcctgatttctttacagatgagattaatactaagaacgggggtgagcgtgtagcaacaatgttgatgtacctataagt |
31646525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 31637658 - 31637839
Alignment:
| Q |
44 |
catatacttaaacaaccattacttgagccgtgtttcacattatgcagagaacggcgaaagctttaatgttctccgttatgaagttggacaaaagtatgat |
143 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||| | |||||||| | |||||| | ||||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
31637658 |
catatacttaaacaactattatttaagtt-tgtttcaaaacatgcagagcatggcgaagacgttaatattctccattatgaagttggacaaaagtacgat |
31637756 |
T |
|
| Q |
144 |
cctcatttagactactttgcggatgattataatactgtgaatggaggtcagcgtatagcaacaatgctgatgtacctgtaagt |
226 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| | |||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
31637757 |
tttcatactgactactttgaagatgaggttaatactaagcatgggggtgagcgtatagcaacaatgttgatgtacctgtaagt |
31637839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University