View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_low_13 (Length: 245)
Name: NF20373_low_13
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_low_13 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 31646122 - 31646360
Alignment:
| Q |
7 |
tagattattctttgtcattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaa |
106 |
Q |
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| T |
31646122 |
tagatttttctttttcattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaa |
31646221 |
T |
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| Q |
107 |
cagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgttctttatgcattttctctgcatttat |
206 |
Q |
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| T |
31646222 |
cagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgttctttatgcattttctctgcatttat |
31646321 |
T |
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| Q |
207 |
acatggcatgttatgtttcatcatatacttaaacaacca |
245 |
Q |
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| T |
31646322 |
acatggcatgttatatttcatcatatatttaaacaacca |
31646360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 31637300 - 31637478
Alignment:
| Q |
22 |
cattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataa |
121 |
Q |
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| T |
31637300 |
cattgccacttcattcatgtcaaaccttttgcttacatatttcttttgcatttagtgcacgaacaagctctggaacttttatcgacagaggatatgataa |
31637399 |
T |
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| Q |
122 |
aattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgttctttatgcattttctctgc |
200 |
Q |
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| T |
31637400 |
aattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgtgttctttatgcattttgtctgc |
31637478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 31630036 - 31630188
Alignment:
| Q |
22 |
cattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataa |
121 |
Q |
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| T |
31630036 |
cattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatga |
31630129 |
T |
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| Q |
122 |
aattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt |
180 |
Q |
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| T |
31630130 |
aattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt |
31630188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 31651626 - 31651751
Alignment:
| Q |
52 |
gtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgc |
151 |
Q |
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| T |
31651626 |
gtttacatattcattctgtatttagggaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgc |
31651725 |
T |
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| Q |
152 |
tgattttacttttatacctgtaggtg |
177 |
Q |
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| T |
31651726 |
tgattttacttttatacctgtaggtg |
31651751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 31656437 - 31656533
Alignment:
| Q |
84 |
acaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtgcgt |
180 |
Q |
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| T |
31656437 |
acaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgt |
31656533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 9105578 - 9105454
Alignment:
| Q |
53 |
tttacatatttcttt-tgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataaaattctgaggaatattgagcaaagaattgc |
151 |
Q |
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||||||||||||||| | ||| ||| | ||||| ||||||||||| ||| | ||| |||| |||||| ||| |||||||||||||| ||| |||||| |
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| T |
9105578 |
tttacatatttctttctacatgtagagtgcgtactagctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgc |
9105479 |
T |
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| Q |
152 |
tgattttacttttatacctgtaggt |
176 |
Q |
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| T |
9105478 |
cgactttacttttattcctgtaggt |
9105454 |
T |
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