View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_low_14 (Length: 222)
Name: NF20373_low_14
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 41558849 - 41559037
Alignment:
| Q |
20 |
ataaaattcaattcattcactttttaataaagaattattcataagcctttgtataaacttactaagattcttcattgtactcaggtttagtttgcgtcaa |
119 |
Q |
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| T |
41558849 |
ataaaattcaattcattcactttttaataaagaattattcataagcctttgtataaacttactaagattcttcattgtactcaggtttagtttgcgtcaa |
41558948 |
T |
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| Q |
120 |
tcttatagatgagattgtttaaatgctagtatcatgactgctatattgctaattcttaaaatatttatttgtagggtaaaggcctatct |
208 |
Q |
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| T |
41558949 |
tcttatagatgagattgtttaaatgctagtatcatgactgctatattgctaattcttaaaatatttatttgtagggtaaaggtctatct |
41559037 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 41542727 - 41542816
Alignment:
| Q |
43 |
ttaataaagaattattcataagcctttgt--ataaacttactaagattcttcattgtactcaggtttagtttgcgtcaatcttatagatg |
130 |
Q |
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| T |
41542727 |
ttaatagagaattattcagaagcctttggtcagaatcttactaagattcttcattgtactctggtttagtttgtcacaatcttatagatg |
41542816 |
T |
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