View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_low_4 (Length: 368)
Name: NF20373_low_4
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 4646416 - 4646078
Alignment:
| Q |
1 |
tcttggcatcaagattgcattcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttgagacgtgctggctttaagaaatgggagaag |
100 |
Q |
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| T |
4646416 |
tcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttgagacgtgctggctttaagaaatgggagaag |
4646317 |
T |
|
| Q |
101 |
ttaattctcaagtaagttttctaattttattttatttaataaaattgaattaacatgagccaactagctagagatgatagatccattaatagtactttaa |
200 |
Q |
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| T |
4646316 |
ttaattctcaagtaagttttctaattttattttatttaataaaattgaattaacatgagccaactagctagagatgatagatccattaatagtagtttaa |
4646217 |
T |
|
| Q |
201 |
ttttacgtttgattaattaattaaaagaatgataataattcaataaactaatcattcgtgatcatatagcttaacttttttcacaatttagtcattgtca |
300 |
Q |
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| T |
4646216 |
ttttacgtttcattaattaattaaaagaatgataataattcaataaactaatcattcgtgatcatatagcttaacttttttcacaatttagtcattgtca |
4646117 |
T |
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| Q |
301 |
tgaatccagcactacatattatataactaaaataatcaa |
339 |
Q |
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| T |
4646116 |
tgaatccagcactacatattatataactaaaataatcaa |
4646078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 4650771 - 4650711
Alignment:
| Q |
11 |
aagattgcattcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
71 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
4650771 |
aagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
4650711 |
T |
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