View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20373_low_9 (Length: 283)
Name: NF20373_low_9
Description: NF20373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20373_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9166557 - 9166834
Alignment:
| Q |
1 |
taaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttc |
100 |
Q |
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| T |
9166557 |
taaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgaacagtaataaacacagataagaaaataaagagcaaagttatttc |
9166656 |
T |
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| Q |
101 |
cacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaac |
200 |
Q |
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| T |
9166657 |
cacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttcccttcataagcaggtaatatgtagctgattgtgaac |
9166756 |
T |
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| Q |
201 |
cttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9166757 |
cttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgtacttctcctatg |
9166834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9155140 - 9155414
Alignment:
| Q |
1 |
taaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaataaagagcaaagttatttc |
100 |
Q |
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|||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| || |
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| T |
9155140 |
taaagttgtacctacaaaaaagcatgccaaactttgcatcatcctactgtctttgagcagtaacaaacacagataagaaaaggaagataaaacca---tc |
9155236 |
T |
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| Q |
101 |
cacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtgaac |
200 |
Q |
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||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
9155237 |
cactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtgaac |
9155336 |
T |
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| Q |
201 |
cttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatg |
278 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9155337 |
cttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatg |
9155414 |
T |
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