View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20374_high_3 (Length: 463)

Name: NF20374_high_3
Description: NF20374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20374_high_3
NF20374_high_3
[»] chr1 (6 HSPs)
chr1 (53-270)||(1589390-1589607)
chr1 (290-449)||(1589596-1589754)
chr1 (151-211)||(19610807-19610867)
chr1 (147-213)||(35804335-35804400)
chr1 (147-213)||(48050942-48051008)
chr1 (157-209)||(13412081-13412133)
[»] chr3 (4 HSPs)
chr3 (123-223)||(30443743-30443843)
chr3 (120-223)||(43753749-43753852)
chr3 (156-196)||(29388286-29388326)
chr3 (122-202)||(32089348-32089428)
[»] chr7 (2 HSPs)
chr7 (147-209)||(24097990-24098052)
chr7 (123-202)||(30774136-30774216)
[»] chr6 (1 HSPs)
chr6 (157-224)||(21873107-21873174)
[»] chr8 (7 HSPs)
chr8 (150-224)||(27567522-27567596)
chr8 (123-211)||(21484951-21485038)
chr8 (122-197)||(29642829-29642904)
chr8 (147-196)||(3938326-3938375)
chr8 (122-199)||(24585973-24586050)
chr8 (147-196)||(31740327-31740376)
chr8 (148-213)||(33012906-33012971)
[»] chr4 (3 HSPs)
chr4 (123-209)||(47678825-47678911)
chr4 (123-208)||(10048533-10048618)
chr4 (149-196)||(17268068-17268115)
[»] chr2 (1 HSPs)
chr2 (122-209)||(41824098-41824185)
[»] chr5 (1 HSPs)
chr5 (123-213)||(4042664-4042754)
[»] scaffold0006 (1 HSPs)
scaffold0006 (156-209)||(278596-278651)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 53 - 270
Target Start/End: Original strand, 1589390 - 1589607
Alignment:
Q  53 tattattacatagctactatttcacaagtgagaaagttatgtgacaagaccataccactccttcggattctttttataagaaacatatgagtatacaaaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  1589390 tattattacatagctactatttcacaagtgagaaagttatgtgacacgaccataccactccttcggattttttttataagaaacatatgagtaaacaaaa 1589489  T
Q  153 gttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaacgttgagggagtattatatagaaaagag 252  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  1589490 gttaatgtatttaatctatattatgaactaaatatattaactttagttgatcaatttgtcttttgtaaaaaacattgagggagtattatatagaaaagag 1589589  T
Q  253 atgtaatgtatttgccac 270  Q
    ||||||||||||||||||    
T  1589590 atgtaatgtatttgccac 1589607  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 290 - 449
Target Start/End: Original strand, 1589596 - 1589754
Alignment:
Q  290 tgtatttgccacttcattttagaaaaattgattaaatatttcaaattaactctataattgcttatttatagtnnnnnnnnncactaaattgcatatacat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||||||||||    
T  1589596 tgtatttgccacttcattttagaaaaattgattaaatatttcaaattaactctataattgcttatttatagtaaaataaa-ctctaaattgcatatacat 1589694  T
Q  390 tttgagaaaagataacatgtgaccaattaattctcttaccttctgagaacgtgaacaggt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1589695 tttgagaaaagataacatgtgaccaattaattctcttaccttctgagaacgtgaacaggt 1589754  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 19610867 - 19610807
Alignment:
Q  151 aagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgt 211  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||| ||||| | ||||||    
T  19610867 aagttgatgtatttagtccatattatgaactaaatacatcaatttttgttgacccatttgt 19610807  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 35804400 - 35804335
Alignment:
Q  147 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 213  Q
    ||||||||||||||||||||| ||||||||| |  ||||||| |||||||| |||| ||||||||||    
T  35804400 acaaaagttaatgtatttaatttatattatggatcaaataca-caattttaattgaccaatttgtct 35804335  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 48050942 - 48051008
Alignment:
Q  147 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 213  Q
    |||||||| |||||||||  || | ||||||||| ||||||||||| ||||||||| ||||||||||    
T  48050942 acaaaagtaaatgtatttggtccacattatgaaccaaatacatcaactttagttgaccaatttgtct 48051008  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 13412081 - 13412133
Alignment:
Q  157 atgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 209  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||| ||||||    
T  13412081 atgtatttagtctagattatgaaccaaatacatcaattttaattgaccaattt 13412133  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 30443743 - 30443843
Alignment:
Q  123 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaa 222  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||| ||||||||||  |||||||    
T  30443743 tttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaatttgtctcttgtaaaa 30443842  T
Q  223 a 223  Q
    |    
T  30443843 a 30443843  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 43753749 - 43753852
Alignment:
Q  120 ttctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgta 219  Q
    |||| ||||||| ||||| ||||||  |||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||||| ||| |||||| | ||    
T  43753749 ttctatttataataaacaaatgagtcaacaaaagttaatgtatttgatctacattatgaaccaaatacatcaactttggttgataaatctgtcttttata 43753848  T
Q  220 aaaa 223  Q
    ||||    
T  43753849 aaaa 43753852  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 29388326 - 29388286
Alignment:
Q  156 aatgtatttaatctatattatgaactaaatacatcaatttt 196  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  29388326 aatgtatttaaactatattttaaactaaatacatcaatttt 29388286  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 32089428 - 32089348
Alignment:
Q  122 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttga 202  Q
    |||||||||| |||||||||  |  | ||||||||||||| |||||| ||||||| |  ||||||||| | ||||||||||    
T  32089428 ctttttataataaacatatggatcaataaaagttaatgtacttaatccatattataagttaaatacattagttttagttga 32089348  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 24097990 - 24098052
Alignment:
Q  147 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 209  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  24097990 acaaaatttaatgtatttaatctatattatgaatcaaatacatcaattttagttgaccaattt 24098052  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 30774136 - 30774216
Alignment:
Q  123 tttttataaga-aacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttga 202  Q
    ||||||||||| || | ||||||  ||||||||| ||||||||||||| ||| || || |||||||||||||||| |||||    
T  30774136 tttttataagataataaatgagtcaacaaaagttgatgtatttaatctttataataaattaaatacatcaattttggttga 30774216  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 21873107 - 21873174
Alignment:
Q  157 atgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaa 224  Q
    |||||||| |||||| ||||||| |||||| |||||||||||||||||||||||| || | |||||||    
T  21873107 atgtatttgatctatgttatgaattaaataaatcaattttagttgatcaatttgttttttataaaaaa 21873174  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 27567522 - 27567596
Alignment:
Q  150 aaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaa 224  Q
    |||||| ||||||||  |||||||||||||| ||||| |||||||||||| ||||||||| |||| | |||||||    
T  27567522 aaagttgatgtatttggtctatattatgaaccaaatatatcaattttagtcgatcaatttatcttttataaaaaa 27567596  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 21484951 - 21485038
Alignment:
Q  123 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgt 211  Q
    ||||||||||||| | ||||| | | |||| || ||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||||||    
T  21484951 tttttataagaaataaatgag-acaaaaaaattgatgtatttagtctacattatgaaccaaatacatcaattttggttgaccaatttgt 21485038  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 29642829 - 29642904
Alignment:
Q  122 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaatttta 197  Q
    |||||||||||| ||| ||  ||  |||||| ||||| |||||| |||||||||| ||||||||||||| ||||||    
T  29642829 ctttttataagagacaaattggtcaacaaaaattaatatatttagtctatattattaactaaatacatctatttta 29642904  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 3938326 - 3938375
Alignment:
Q  147 acaaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 196  Q
    ||||||||| ||||||||  ||| |||||||||| |||||||||||||||    
T  3938326 acaaaagttgatgtatttggtctttattatgaaccaaatacatcaatttt 3938375  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 24585973 - 24586050
Alignment:
Q  122 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagt 199  Q
    |||||||||||||| | ||||||  ||||||||| || |||||  |||| || || ||||||||||||||| ||||||    
T  24585973 ctttttataagaaataaatgagtcaacaaaagttgatttatttggtctacatgataaactaaatacatcaactttagt 24586050  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 31740327 - 31740376
Alignment:
Q  147 acaaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 196  Q
    |||||| || ||||||||||||||||||| |||  |||||||||||||||    
T  31740327 acaaaacttgatgtatttaatctatattacgaatgaaatacatcaatttt 31740376  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 33012906 - 33012971
Alignment:
Q  148 caaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 213  Q
    ||||||||||| |||||  ||||| |||||||  ||||||||||| ||||||| ||| ||||||||    
T  33012906 caaaagttaatatatttggtctatgttatgaatcaaatacatcaactttagttaatccatttgtct 33012971  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 47678911 - 47678825
Alignment:
Q  123 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 209  Q
    ||||||||||||| | ||||||  ||||||  |||||||||| ||||| ||||| ||  ||||||||||||||||||||| ||||||    
T  47678911 tttttataagaaataaatgagtcaacaaaaactaatgtatttgatctacattataaatcaaatacatcaattttagttgaccaattt 47678825  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 10048618 - 10048533
Alignment:
Q  123 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatt 208  Q
    ||||||||||||||| |||| |  ||||||||| ||||||||  |||||||  ||||| |||||||| |||||||||||| |||||    
T  10048618 tttttataagaaacaaatgaatcaacaaaagttgatgtatttggtctatatcctgaaccaaatacattaattttagttgaccaatt 10048533  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 17268068 - 17268115
Alignment:
Q  149 aaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 196  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||    
T  17268068 aaaagttaatgtatttgatctatattatgaaccacatacatcaatttt 17268115  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 41824098 - 41824185
Alignment:
Q  122 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 209  Q
    |||||||||||| ||  | ||||  |||||| ||||| ||||| |||   ||||||||||||||||||||||||||||||| ||||||    
T  41824098 ctttttataagacacgaacgagttaacaaaaattaatatatttgatcatcattatgaactaaatacatcaattttagttgaccaattt 41824185  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 4042664 - 4042754
Alignment:
Q  123 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 213  Q
    ||||||||||||| | ||||||  | ||||||| ||| |||| ||||||||||| |||  |||||||||| | ||||| ||||||||||||    
T  4042664 tttttataagaaataaatgagtcaataaaagttgatgcatttgatctatattataaaccgaatacatcaactctagttaatcaatttgtct 4042754  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 278596 - 278651
Alignment:
Q  156 aatgtatttaatctat--attatgaactaaatacatcaattttagttgatcaattt 209  Q
    |||||||||| |||||  ||||||||| |||||||||||||||| |||| ||||||    
T  278596 aatgtatttagtctatctattatgaaccaaatacatcaattttaattgaccaattt 278651  T

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