View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20374_high_4 (Length: 319)
Name: NF20374_high_4
Description: NF20374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20374_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 32786985 - 32787270
Alignment:
| Q |
20 |
acacgatgcatcacaagaagtgcaaatacaaatacaaccaaacttgctattttctttgatggattgaataagttccacttccccatcacataggccttga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786985 |
acacgatgcatcacaagaagtgcaaatacaaatacaaccaaacttgctatttcctttgatggattgaataagttccacttccccatcacataggccttga |
32787084 |
T |
|
| Q |
120 |
acttcctaaagaaagatccttgattctccattatcatcataattgcatctacattctctttagagtttggattgtttggcatcattggattgagttgaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32787085 |
acttcctaaagaaagatccttgattctccattatcatcataattgcatctacattctctttagagtttggattgtttggcatcattggattgagttgaat |
32787184 |
T |
|
| Q |
220 |
ttgaagtgtttgtgaaggaacaacttggtgaaataatgtcatggctacttgttgagttgaaaccaacattctatgactaacctttg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32787185 |
ttgaagtgtttgtgaaggaacaacttggtgaaataatgtcatggctacttgttgagttgaaaccaacattctatgactaacctttg |
32787270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University