View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20374_low_1 (Length: 525)
Name: NF20374_low_1
Description: NF20374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20374_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Complemental strand, 43453238 - 43452834
Alignment:
| Q |
5 |
actaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcc |
104 |
Q |
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| T |
43453238 |
actaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcc |
43453139 |
T |
|
| Q |
105 |
cggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaa |
204 |
Q |
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| T |
43453138 |
tggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaa |
43453039 |
T |
|
| Q |
205 |
caaaaccgattctgctcgaagacctgcactttttggtgttaccctcctaatattaatattttttgacatcattgtttttgttggtgtagctttttccttc |
304 |
Q |
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| T |
43453038 |
caaaaccgattctgctcgaagacctgcactttttggtgttaccctcctaatattaatattttttgacatcattgtttttgttggtgtagctttttccttc |
43452939 |
T |
|
| Q |
305 |
aactgtataactggttctgcatcttcttgtgatatgctagtttgtttgtctgaagcagtattagactgctgaagtgtcttcatgtctttgttctcaattt |
404 |
Q |
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| T |
43452938 |
aactgtgtaactggttctgcatcttcttgtgatatgctagtttgtctgtctgaagcagtattaga---ctgaagtgtcttcatgtctttgttctcaattt |
43452842 |
T |
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| Q |
405 |
tttgaaca |
412 |
Q |
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| T |
43452841 |
tgtgaaca |
43452834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 43462674 - 43462433
Alignment:
| Q |
8 |
aagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcccgg |
107 |
Q |
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|||||||||||||| | ||| ||||||||||||||||||| ||||| ||| |||||||| |||||||| ||| | |||||||| || || ||||||| |
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| T |
43462674 |
aagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcatacgttttcccgg |
43462575 |
T |
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| Q |
108 |
ttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||||| |
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| T |
43462574 |
ttgatttctccaaacaaagtgaagtagttccaaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaa |
43462475 |
T |
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| Q |
208 |
aaccgattctgctcgaagacctgcactttttggtgttaccct |
249 |
Q |
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| T |
43462474 |
aattgattcttctcgaagacctgcactttttgctgttaccct |
43462433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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