View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20374_low_4 (Length: 350)
Name: NF20374_low_4
Description: NF20374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20374_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 7187668 - 7187572
Alignment:
| Q |
237 |
aaagtgatatttaaaccaaagctttacattaatgagtgcatcacgattgatctcatttttcgttgccatttgaaaatatttttattttacttgagag |
333 |
Q |
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| T |
7187668 |
aaagtgatatttaaaccaaagttttacattaatgagtgcatcacgattgatctcatttttcgttgccatttgaaaatatttttattttacttgagag |
7187572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 7187803 - 7187686
Alignment:
| Q |
130 |
aaatcgaatatcatttacacacaacggttaagattaatattttaaattagattgaactacaatgaacaacnnnnnnntttcgagagttatagcaatgtta |
229 |
Q |
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| T |
7187803 |
aaatcaaatatcatttacgcacaattgttaagattaatattttgaattagat-gaagcacaatgagcaacaaatttttttggagagttatagcaatgtta |
7187705 |
T |
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| Q |
230 |
tattttcaaagtgatattt |
248 |
Q |
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| T |
7187704 |
tatttttaaagtgatattt |
7187686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 7187962 - 7187911
Alignment:
| Q |
15 |
aaaataggtacgtttggaaagactaaaaaca-aaaatttcttttataaaaat |
65 |
Q |
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| T |
7187962 |
aaaataggtacgtttggaaaaactaaaaacaaaaaaattcttttataaaaat |
7187911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 7187901 - 7187865
Alignment:
| Q |
60 |
aaaaatagtatacttgcaagaatcaaaaacattttca |
96 |
Q |
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| T |
7187901 |
aaaaatagtatacttgcaagaataaaaaacattttca |
7187865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 7187847 - 7187817
Alignment:
| Q |
84 |
aaaaacattttcaaaccaaagttttgctatg |
114 |
Q |
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| T |
7187847 |
aaaaacattttcaaaccaaagttttgctatg |
7187817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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