View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20375_high_12 (Length: 326)
Name: NF20375_high_12
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20375_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 6916687 - 6916394
Alignment:
| Q |
5 |
ccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatg |
104 |
Q |
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| T |
6916687 |
ccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcattcagctgccttattgcccttgtatg |
6916588 |
T |
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| Q |
105 |
tgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgt |
204 |
Q |
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| T |
6916587 |
tgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcgaacgaatagccgt |
6916488 |
T |
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| Q |
205 |
agaatacccaaacatattgttaagagggacatgggctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctcttg |
298 |
Q |
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| T |
6916487 |
agaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacaccttttctcttg |
6916394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
75 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
174 |
Q |
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| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
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| Q |
175 |
ctttccctg |
183 |
Q |
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| T |
15036041 |
ctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
180 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
234 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 15037688 - 15037738
Alignment:
| Q |
245 |
atgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
295 |
Q |
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| T |
15037688 |
atgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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