View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20375_high_3 (Length: 357)
Name: NF20375_high_3
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20375_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 84 - 334
Target Start/End: Original strand, 32062504 - 32062757
Alignment:
| Q |
84 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
|
| Q |
184 |
tcaatccttgcc---gatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnnnnnngattaatgaagcaggagaaagcac |
280 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32062604 |
tcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcac |
32062703 |
T |
|
| Q |
281 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062704 |
cggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
32062757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
97 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
196 |
Q |
| |
|
||||||||||| |||||| | || ||||| | | ||||||| ||||| |||| || |||||| |||||||||||| || |||||||||| || ||||| | |
|
|
| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
|
| Q |
197 |
atgatga |
203 |
Q |
| |
|
||||||| |
|
|
| T |
32062752 |
atgatga |
32062758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University