View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20375_high_4 (Length: 353)
Name: NF20375_high_4
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20375_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 43255611 - 43255951
Alignment:
| Q |
3 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255611 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
43255710 |
T |
|
| Q |
103 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255711 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttctc |
43255810 |
T |
|
| Q |
203 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255811 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttt |
43255910 |
T |
|
| Q |
303 |
cccatggaaccaggattgtaccaatcttggagtcttctgtg |
343 |
Q |
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| T |
43255911 |
cccatggaaccaggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 43258877 - 43259217
Alignment:
| Q |
3 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258877 |
catatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaa |
43258976 |
T |
|
| Q |
103 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43258977 |
ctcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattccttcaatgatttctc |
43259076 |
T |
|
| Q |
203 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttt |
302 |
Q |
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| T |
43259077 |
atctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtttt |
43259176 |
T |
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| Q |
303 |
cccatggaaccaggattgtaccaatcttggagtcttctgtg |
343 |
Q |
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| T |
43259177 |
cccatggagccaggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
4 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
104 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
203 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
|
| Q |
204 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
|
| Q |
304 |
ccat |
307 |
Q |
| |
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|||| |
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| T |
43247915 |
ccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
45 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
140 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
4 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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