View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20375_high_8 (Length: 335)

Name: NF20375_high_8
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20375_high_8
NF20375_high_8
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-320)||(1058-1377)
[»] chr2 (4 HSPs)
chr2 (36-320)||(23348413-23348697)
chr2 (1-320)||(12742092-12742413)
chr2 (40-320)||(18354744-18355030)
chr2 (1-203)||(10328423-10328627)
[»] chr7 (3 HSPs)
chr7 (40-320)||(43070819-43071099)
chr7 (212-320)||(1262493-1262601)
chr7 (212-320)||(48849391-48849499)
[»] chr3 (7 HSPs)
chr3 (35-320)||(53972718-53973003)
chr3 (36-320)||(19881544-19881828)
chr3 (35-193)||(37982939-37983097)
chr3 (185-320)||(37982756-37982891)
chr3 (212-302)||(31685485-31685575)
chr3 (234-279)||(17682201-17682246)
chr3 (234-279)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (40-320)||(9044206-9044486)
chr5 (1-320)||(7472881-7473206)
chr5 (40-320)||(30441983-30442263)
chr5 (74-156)||(40163917-40163996)
[»] chr8 (3 HSPs)
chr8 (211-320)||(14677630-14677739)
chr8 (219-313)||(31100488-31100582)
chr8 (219-305)||(5658175-5658261)
[»] scaffold0035 (1 HSPs)
scaffold0035 (211-320)||(35465-35574)
[»] chr4 (1 HSPs)
chr4 (211-318)||(29862969-29863076)
[»] chr6 (3 HSPs)
chr6 (219-305)||(33045062-33045148)
chr6 (211-288)||(10092908-10092985)
chr6 (278-320)||(22000988-22001030)
[»] scaffold0045 (1 HSPs)
scaffold0045 (211-316)||(11242-11347)


Alignment Details
Target: scaffold0596 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 1377 - 1058
Alignment:
Q  1 atcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattta 100  Q
    |||||||||||||||||||||||||         |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1377 atcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctattta 1278  T
Q  101 aatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcat 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1277 aatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcat 1178  T
Q  201 cttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcg 300  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1177 cttcaacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcg 1078  T
Q  301 gcgacagagagagcggcaac 320  Q
    ||||| ||||||||||||||    
T  1077 gcgacggagagagcggcaac 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 23348413 - 23348697
Alignment:
Q  36 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 135  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348413 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 23348512  T
Q  136 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 235  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23348513 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 23348612  T
Q  236 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23348613 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 23348697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 12742413 - 12742092
Alignment:
Q  1 atcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatt 98  Q
    |||||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12742413 atcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatt 12742314  T
Q  99 taaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagc 198  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12742313 taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagc 12742214  T
Q  199 atcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctg 298  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  12742213 atcttcaacacaccttgctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctg 12742114  T
Q  299 cggcgacagagagagcggcaac 320  Q
    ||||| | ||||||||||||||    
T  12742113 cggcggcggagagagcggcaac 12742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 18354744 - 18355030
Alignment:
Q  40 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 139  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18354744 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 18354843  T
Q  140 tggaataacaaagttagggaaaagttacaagaacaacgatttagg------atatatatagtagcatcttcaacacacctggctaatacgatgccgcaga 233  Q
    |||||||||||||||||||||||| |||| |||||||||||||||      |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  18354844 tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga 18354943  T
Q  234 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    | |||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18354944 caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 18355030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10328423 - 10328627
Alignment:
Q  1 atcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattta 100  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10328423 atcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattta 10328522  T
Q  101 aatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg--atatatatagtagc 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||    
T  10328523 aatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagc 10328622  T
Q  199 atctt 203  Q
    |||||    
T  10328623 atctt 10328627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 43070819 - 43071099
Alignment:
Q  40 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 139  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43070819 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 43070918  T
Q  140 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 239  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43070919 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaa 43071018  T
Q  240 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43071019 cggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 43071099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 1262601 - 1262493
Alignment:
Q  212 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 311  Q
    |||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  1262601 ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa 1262502  T
Q  312 agcggcaac 320  Q
    |||||||||    
T  1262501 agcggcaac 1262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 48849391 - 48849499
Alignment:
Q  212 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 311  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||     
T  48849391 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa 48849490  T
Q  312 agcggcaac 320  Q
    |||||||||    
T  48849491 agcggcaac 48849499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 35 - 320
Target Start/End: Original strand, 53972718 - 53973003
Alignment:
Q  35 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 134  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972718 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 53972817  T
Q  135 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagac 234  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  53972818 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgccgcagac 53972917  T
Q  235 gacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53972918 gacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 53973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 19881544 - 19881828
Alignment:
Q  36 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 135  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881544 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 19881643  T
Q  136 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 235  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19881644 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 19881743  T
Q  236 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||    
T  19881744 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaac 19881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 37983097 - 37982939
Alignment:
Q  35 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 134  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983097 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 37982998  T
Q  135 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatata 193  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37982997 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatata 37982939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 37982891 - 37982756
Alignment:
Q  185 atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacg 284  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  37982891 atatatatattagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacg 37982792  T
Q  285 acaggagagagctgcggcgacagagagagcggcaac 320  Q
    | ||||||||||||||||||| ||||||||||||||    
T  37982791 ataggagagagctgcggcgacggagagagcggcaac 37982756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 31685575 - 31685485
Alignment:
Q  212 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 302  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  31685575 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc 31685485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
Q  234 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 279  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||||    
T  17682246 cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg 17682201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
Q  234 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 279  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  19766488 cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg 19766443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 320
Target Start/End: Complemental strand, 9044486 - 9044206
Alignment:
Q  40 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 139  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9044486 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 9044387  T
Q  140 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 239  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  9044386 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgctgcagacgacaa 9044287  T
Q  240 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    || ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9044286 cgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 9044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 7472881 - 7473206
Alignment:
Q  1 atcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatt 98  Q
    |||||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7472881 atcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatt 7472980  T
Q  99 taaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg----atatatatag 194  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||    
T  7472981 taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatag 7473080  T
Q  195 tagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagaga 294  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  7473081 tagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagaga 7473180  T
Q  295 gctgcggcgacagagagagcggcaac 320  Q
    ||||||||||| ||||||||| ||||    
T  7473181 gctgcggcgacggagagagcgacaac 7473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 30441983 - 30442263
Alignment:
Q  40 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 139  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30441983 atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 30442082  T
Q  140 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 239  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  30442083 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacatatggctgatacgatgccgcagacgacaa 30442182  T
Q  240 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    || | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  30442183 cggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaac 30442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  74 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttag 156  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| |||||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 14677630 - 14677739
Alignment:
Q  211 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 310  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  14677630 cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga 14677729  T
Q  311 gagcggcaac 320  Q
    ||||||||||    
T  14677730 gagcggcaac 14677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 31100488 - 31100582
Alignment:
Q  219 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagag 313  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  31100488 atacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggagagag 31100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 5658261 - 5658175
Alignment:
Q  219 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 305  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5658261 atacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgac 5658175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 35574 - 35465
Alignment:
Q  211 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 310  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  35574 cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga 35475  T
Q  311 gagcggcaac 320  Q
    |||| |||||    
T  35474 gagcagcaac 35465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 29862969 - 29863076
Alignment:
Q  211 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 310  Q
    ||||||| ||||||||||||||| ||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29862969 cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga 29863068  T
Q  311 gagcggca 318  Q
    ||||||||    
T  29863069 gagcggca 29863076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 33045062 - 33045148
Alignment:
Q  219 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 305  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045062 atacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 33045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 10092985 - 10092908
Alignment:
Q  211 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacag 288  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  10092985 cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag 10092908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 22000988 - 22001030
Alignment:
Q  278 ggcgacgacaggagagagctgcggcgacagagagagcggcaac 320  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  22000988 ggcgacgacaggagagagctgcggcgacggagagagcggcaac 22001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 11242 - 11347
Alignment:
Q  211 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 310  Q
    ||||||| || | |||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11242 cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga 11341  T
Q  311 gagcgg 316  Q
    ||||||    
T  11342 gagcgg 11347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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