View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20375_high_9 (Length: 333)

Name: NF20375_high_9
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20375_high_9
NF20375_high_9
[»] chr7 (2 HSPs)
chr7 (26-229)||(27776866-27777069)
chr7 (93-157)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (106-157)||(41218921-41218972)
chr5 (94-158)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (94-156)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (94-156)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (94-156)||(18254024-18254086)
chr4 (93-157)||(51764235-51764299)
chr4 (102-155)||(22643579-22643632)
chr4 (94-158)||(22176935-22176999)
chr4 (94-158)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (94-156)||(53978164-53978226)
chr3 (94-158)||(8836233-8836297)
chr3 (94-158)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (94-156)||(49641073-49641135)
chr1 (94-158)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (93-157)||(19481630-19481694)
chr2 (93-157)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (93-158)||(34309881-34309946)
chr6 (118-157)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (94-158)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 27777069 - 27776866
Alignment:
Q  26 catcatgtgaaatagcataagcacaaaaagagataggaatatgataatgaaacattaaggtccttgacacattgagaatatgttgatacttcctttcaac 125  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  27777069 catcatgtgaaatagcataagaacaaaaagagataggaatctgatattgaaatattaaggtccttgacacattgagaatatgttgatgcttcctttcaac 27776970  T
Q  126 caccccattttgttggggtgtttcaacacaagaaagttaatgtaaaatacccttacttctgtaaaaaagactcaaacataaattcttcacaaatgtcatc 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||| ||| |||||||    
T  27776969 caccccattttgttggggtgtttcaacacaagaaagttaatgcaaaataccatttcttttgtaaaatagactcaaacataaattcttctcaattgtcatc 27776870  T
Q  226 agat 229  Q
    ||||    
T  27776869 agat 27776866  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 19741157 - 19741093
Alignment:
Q  93 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    |||||| ||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19741157 cacattaagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19741093  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 41218921 - 41218972
Alignment:
Q  106 tgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41218921 tgttgatgcttcctttcaaccaccccattttgttggggggtttcaacacaag 41218972  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 26472200 - 26472136
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  26472200 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 26472136  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 27146 - 27208
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 156  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  27146 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 27208  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 15193208 - 15193146
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 156  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  15193208 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 15193146  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 18254086 - 18254024
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 156  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  18254086 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 18254024  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 51764299 - 51764235
Alignment:
Q  93 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  51764299 cacattgagaatgtgttgattctttctttcaacaaccccattttgttgaggcgtctcaacacaag 51764235  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 22643632 - 22643579
Alignment:
Q  102 aatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacaca 155  Q
    ||||||||||| ||| |||||||||  ||||||||||||||| |||||||||||    
T  22643632 aatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacaca 22643579  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 22176935 - 22176999
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  22176935 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 22176999  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 23167441 - 23167505
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||||||||| ||||| | ||| ||||||||   ||||||||||||||| || |||||||||||    
T  23167441 acattgagaatgtgttggtgctttctttcaactctcccattttgttggggagtctcaacacaaga 23167505  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 53978226 - 53978164
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 156  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  53978226 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 53978164  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 8836297 - 8836233
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  8836297 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 8836233  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 55310232 - 55310168
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||| ||||||| ||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  55310232 acattaagaatatattgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 55310168  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 49641073 - 49641135
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 156  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  49641073 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 49641135  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 52777967 - 52777903
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  52777967 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 52777903  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 19481694 - 19481630
Alignment:
Q  93 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19481694 cacattgagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19481630  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 11337829 - 11337765
Alignment:
Q  93 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    |||||||||||| ||||||| ||| ||||||||  ||||||||||||| || || ||||||||||    
T  11337829 cacattgagaatgtgttgatgctttctttcaacagccccattttgttgaggcgtctcaacacaag 11337765  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 34309946 - 34309881
Alignment:
Q  93 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||||||| |||||||||| ||||||||| || |  ||||||||||| || || |||||||||||    
T  34309946 cacattgaggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaaga 34309881  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 21320870 - 21320833
Alignment:
Q  118 ctttcaaccaccccattttgttggggtgtttcaacacaag 157  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  21320870 ctttcaaccaccccattttgttggg--gtttcaacacaag 21320833  T

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Target: scaffold0329 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 11296 - 11232
Alignment:
Q  94 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 158  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  11296 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 11232  T

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