View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20375_low_1 (Length: 1035)
Name: NF20375_low_1
Description: NF20375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20375_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 747; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 1 - 974
Target Start/End: Original strand, 21285385 - 21286370
Alignment:
| Q |
1 |
taagataaagtggtttctttttaatactaaaaagtgcatattgtgattgaaggtgaaaggatttattaaatataggatagtttagatacaaataagacat |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
21285385 |
taagataaagtagtttctttttaatactaaaaagtgcatattgtgattgaaggtgaaaggatctattaaatatgggatagtttagatacaaataagacat |
21285484 |
T |
|
| Q |
101 |
tttttaatgactaatgttggttgttatttttgttattagagtaaattcgaacttattacttttcatcactccaaccactattnnnnnnntcagtaatact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
21285485 |
tttttaatgactaatgttggttgttatttttgttattagagtgaattcgaacttattacttttcatcactcaaaccactattaaaaaaatcagtaatact |
21285584 |
T |
|
| Q |
201 |
ttcagatattttatagtgaaaatttcaaatagaaatatttcaaacaagcacataatatggggcagaggaagtgacatctttcc----------tcgaaag |
290 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
21285585 |
ttcagatattttatagtgaaaatttcaaatagaaatatttcaaacaagcacataatatgaggtagaggaagtgacatctttcaaattcctccatcgaaag |
21285684 |
T |
|
| Q |
291 |
ttttcaaaatgtgttggtatggagagttgaaaggaatacaaaaggataaaagaatggctagacacaattttgtttcagtatacaaacactcattcataaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21285685 |
ttttcaaaatgtgttggtatggagagttgaaaggaatacaaaaggataaaagaatggctagacacaattttgtttcagtatacaaacactcattcataaa |
21285784 |
T |
|
| Q |
391 |
cacaagttacaccatatgtgattatggaatggaaaagtaaactaatctggtggtagaaactggtaaaaa--ttatttttcccttnnnnnnncatatagca |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
21285785 |
cacaagttacaccatatgtgattatggaatggaaaagtaaactaatctagtggtagaaactggtaaaaaaattatttttcccttaaaaaaacatatagca |
21285884 |
T |
|
| Q |
489 |
catcgtgttgaggggggagtgacaataaatttgtggcaagaagtaccttatcaagtaatccatcaaggccaacctcccactgttcacatatggtgtgaat |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21285885 |
catcgtgttgaggggggagtgacaataaatttgtggcaagaagtaccttatcaagtaatccatcaaggccaacctcccactgttcacatatggtgtgaat |
21285984 |
T |
|
| Q |
589 |
agaagagtgatcaccgctttcatgaccattcatggggcagttggtaagctgaatcacgtactctcgttacaattttacaagtgtacaaacgctatt-aca |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
21285985 |
agaagagtgatcaccgctttcatgaccattcatgaggcagttggtaagctgaatcacgtactctcgttacaattttacaagtgtacaaaagctattaaca |
21286084 |
T |
|
| Q |
688 |
ccaataagaga---ccttattggaatatatggtatgaaattagttgaacgtttgaagactaaacaccaagtcatgaaacttagaactagtgttgggaatt |
784 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21286085 |
ccaataagagacctccttattggaacatatggtatgaaattagttgaacgtttgaagactaaacaccaagtcatgaaacttagaactagtgttgggaatt |
21286184 |
T |
|
| Q |
785 |
gagaaaaatggtagtcccaaattgaaaagaacacaaagatcagtagtgtttatataatatggacattttaagattataaattatacttattaagtaagac |
884 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
21286185 |
gagaaaaatggtagtcccaaattgaaaagaacacaaagatcaagagtgtttatataatacagacattttaagagtataaaatatacttattaagtaagac |
21286284 |
T |
|
| Q |
885 |
gtgaatcttggaatttggtttgtctggcatgcatacacgtaagtatgtcggatggattgcaatccaatgaccatgtcttacttagtacaa |
974 |
Q |
| |
|
|||||||||| ||||| ||| | | |||| ||| |||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| |
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|
| T |
21286285 |
gtgaatcttgagatttg----gtccgtcctgcagacatgtaagtatgtcggatggattgcaatctaatgatcatgtcttatttaatacaa |
21286370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 543 - 777
Target Start/End: Original strand, 21289144 - 21289367
Alignment:
| Q |
543 |
gtaatccatcaaggccaacctcccactgttcacatatggtgtgaatagaagagtgatcaccgctttcatgaccattcatggggcagttggtaagctgaat |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||| | |||| || ||||||||||||||| |
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|
| T |
21289144 |
gtaatccatcaaggccaacctcccactgttc-----------gaattgaagagtgatcaccgcttttacgaccgtacatgaggtcgttggtaagctgaat |
21289232 |
T |
|
| Q |
643 |
cacgtactctcgttacaattttacaagtgtacaaacgctattacaccaataagagaccttattggaatatatggtatgaaattagttgaacgtttgaaga |
742 |
Q |
| |
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|| ||| |||| || ||||||||||||| |||| | |||||||||||||||| | |||| | |||| ||| ||||||||||||||||| ||| ||| | |
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| T |
21289233 |
catgtaatctctttgcaattttacaagtttacagaagctattacaccaataaaaagccttgtgggaacataccgtatgaaattagttgaaagttagaata |
21289332 |
T |
|
| Q |
743 |
ctaaacaccaagtcatgaaacttagaactagtgtt |
777 |
Q |
| |
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|
| T |
21289333 |
ctaaacaccaaatcttaagacttagaactaatgtt |
21289367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 526 - 643
Target Start/End: Original strand, 21296275 - 21296392
Alignment:
| Q |
526 |
aagaagtaccttatcaagtaatccatcaaggccaacctcccactgttcacatatggtgtgaatagaagagtgatcaccgctttcatgaccattcatgggg |
625 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||| | | |||||||||||||| | | | |
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| T |
21296275 |
aagaagtaccttatcaggtaatccatcaagcccaagctcccactgttcacaaatggtgcgaatagaagagtggttgctgctttcatgaccatcccttaag |
21296374 |
T |
|
| Q |
626 |
cagttggtaagctgaatc |
643 |
Q |
| |
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|||||||||||||||||| |
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| T |
21296375 |
cagttggtaagctgaatc |
21296392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 338 - 407
Target Start/End: Original strand, 21295503 - 21295568
Alignment:
| Q |
338 |
aaaagaatggctagacacaattttgtttcagtatacaaacactcattcataaacacaagttacaccatat |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
21295503 |
aaaagaatggctagacacaattttgtttcagtatacaaa----cattcataaacacaatttacaccatat |
21295568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 21288205 - 21288266
Alignment:
| Q |
344 |
atggctagacacaattttgtttcagtatacaaacactcattcataaacacaagttacaccatatgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
21288205 |
atggctagacacaattttgtttcagtatacaaa----tattcataaacacaatttacaccatatgt |
21288266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 982 - 1020
Target Start/End: Original strand, 21286570 - 21286608
Alignment:
| Q |
982 |
agcttatttcaacattttgtgcactgtccggatttattt |
1020 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
21286570 |
agcttatttcaacattttgtgcactgtccggatttattt |
21286608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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