View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20376_high_10 (Length: 367)

Name: NF20376_high_10
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20376_high_10
NF20376_high_10
[»] chr4 (1 HSPs)
chr4 (1-351)||(42852221-42852573)
[»] chr3 (2 HSPs)
chr3 (1-247)||(18867805-18868048)
chr3 (1-247)||(4675954-4676200)
[»] chr6 (6 HSPs)
chr6 (1-248)||(14121480-14121726)
chr6 (1-247)||(14115324-14115569)
chr6 (65-215)||(14757239-14757389)
chr6 (163-247)||(24909586-24909670)
chr6 (163-249)||(7827150-7827236)
chr6 (190-248)||(10806258-10806316)
[»] scaffold0045 (3 HSPs)
scaffold0045 (1-250)||(1688-1936)
scaffold0045 (1-248)||(8072-8318)
scaffold0045 (1-227)||(1-226)
[»] chr7 (3 HSPs)
chr7 (1-247)||(28443468-28443715)
chr7 (57-247)||(37522514-37522704)
chr7 (163-247)||(41543626-41543710)
[»] chr2 (2 HSPs)
chr2 (1-248)||(33034779-33035026)
chr2 (163-247)||(44612409-44612493)
[»] scaffold0202 (1 HSPs)
scaffold0202 (49-247)||(7138-7335)
[»] chr8 (2 HSPs)
chr8 (48-252)||(9905903-9906106)
chr8 (165-247)||(4973084-4973166)
[»] chr1 (1 HSPs)
chr1 (86-250)||(43103045-43103209)
[»] chr5 (1 HSPs)
chr5 (163-247)||(40820427-40820511)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 42852573 - 42852221
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42852573 tgcctcagctcgccatgaacttgccttgggctcgccgtggcgagttgatcttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 42852474  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42852473 tcctacacaaacagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 42852374  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaatgggggacaaagaagaggtttc--ggacatataatttctcttaaagttgtga 298  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  42852373 agtgcctaaaatgtatgtcctatttaactgttttttgacacttatcaatgggggacaaagaagaggtttcggggacatataatttctcttaaagttgtga 42852274  T
Q  299 cattcaatctcatttatgtggttgatcttaccagcccaatgtaatgaatgagg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42852273 cattcaatctcatttatgtggttgatcttaccagcccaatgtaatgaatgagg 42852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 18867805 - 18868048
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||| ||||||| ||||||||||| ||||  |   ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  18867805 tgcctcagctcgctatgaactcgccttgggctcaccgtgtt---ttgaccttttcatttctctgtgttttcttgcattttaagtatccagacatgcattt 18867901  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18867902 tcctacacaaatagttggcattagatgtaaaaagcataaatgaatgattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 18868001  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  18868002 agtgcctaaaatgtatgtcctatttaactgttttctgacacttatca 18868048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 4675954 - 4676200
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||||||||| | |||||||||||||| | | |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  4675954 tgcctcagctcgccatgaagtcgccttgggctcgcc-tggcgagttgaccttttcatttcttcatgttttcttgctttttaagtatccaggaatgcattt 4676052  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagc-ttttcactagataacttgcgaaccaagtaatca 199  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  4676053 tcctacacaaacagttggcattagatgtaaaaagcataattgaatgattcttcaatatttctgagctttttcactagataacttgcgaaccaagtaatca 4676152  T
Q  200 aagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  4676153 aagtgcctaaaatgtatgtcctatttaactgttttctgacacttatca 4676200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14121726 - 14121480
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||||||||| | |||||||| ||||| | | |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  14121726 tgcctcagctcgccatgaagtcgccttgggttcgcc-tggcgagttgaccttttcatttcttcatgttttcttgctttttaaatatccaggcatgcattt 14121628  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14121627 tcctacacaaacagttggcattagatgtaaaaagcataaatgaatgattcttcaatatttatgagcttttcactagataacttgcaaaccaagtaatcaa 14121528  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaa 248  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14121527 agtgcctaaaatgtatgtcctatttaactgttttctgacacttatcaa 14121480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 14115569 - 14115324
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||||||||| | |||||||| ||||| | | |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  14115569 tgcctcagctcgccatgaagtcgccttgggttcgcc-tggcgagttgaccttttcatttcttcatgttttcttgctttttaaatatccaggcatgcattt 14115471  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14115470 tcctacacaaacagttggcattagatgtaaaaagcataaatgaatgattcttcaatatttatgagcttttcactagataacttgcaaaccaagtaatcaa 14115371  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  14115370 agtgcctaaaatgtatgtcctatttaactgttttctgacacttatca 14115324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 14757389 - 14757239
Alignment:
Q  65 tgttttcttgctttttaagtatccaggcatgcattttcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatga 164  Q
    ||||| ||| |||| ||||| ||  |||| |||||||||| ||||||  ||||  || || | |||||||||||||   |  |||||||  ||||| |||    
T  14757389 tgtttcctttctttctaagtctcttggcaagcattttcctgcacaaaaggttggtatgaggtataaaaagcataaactgacaattcttcgttatttttga 14757290  T
Q  165 gcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgta 215  Q
    |||||||| |||||||||||| || ||||||| ||||||  ||||||||||    
T  14757289 gcttttcattagataacttgcaaaacaagtaaccaaagtatctaaaatgta 14757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 24909586 - 24909670
Alignment:
Q  163 gagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||  |||||| |||  || |||||||| |||||||||||||| ||| | ||||||||||  |||||| |||||||||    
T  24909586 gagcttttcatgagataatttgtaaaacaagtaattaaagtgcctaaaatatatatgttatttaactaatttctggcacttatca 24909670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 7827150 - 7827236
Alignment:
Q  163 gagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaat 249  Q
    ||||||||||  |||||| |||  || |||||||| |||||||||||||| ||| | ||||||||||  ||| || |||||||||||    
T  7827150 gagcttttcatgagataatttgtaaaacaagtaattaaagtgcctaaaatatatatgttatttaactaatttatggcacttatcaat 7827236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 10806316 - 10806258
Alignment:
Q  190 caagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaa 248  Q
    |||||||| |||||||||||||| ||| | ||||||||||  |||||| ||||||||||    
T  10806316 caagtaattaaagtgcctaaaatatatatgttatttaactaatttctggcacttatcaa 10806258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1936 - 1688
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    |||||||||||||||||||||  ||||||| ||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1936 tgcctcagctcgccatgaactcaccttgggatcgcc-tggcgagttaaccttttcatttctttgtgttttcttgctttttaagtatccagacatgcattt 1838  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1837 tcctacacaaacagttggcattagatgtaaaaagcataaatgaactattcttcaatatttatgagcttttcacgagataacttgtgaaccaagtaatcaa 1738  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaatg 250  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||    
T  1737 agtgcctaaaatatatatcctatttaactgttttctgacaattatcaatg 1688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8318 - 8072
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    |||||||||||||||||||||  ||||||| ||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8318 tgcctcagctcgccatgaactcaccttgggatcgcc-tggcgagttaaccttttcatttctttgtgttttcttgctttttaagtatccagacatgcattt 8220  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  8219 tcctacacaaacagttggcattagatgtaaaaagcataaatgaactattcttcaatatttatgagcttttcacgagataacttatgaaccaagtaatcaa 8120  T
Q  201 agtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaa 248  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||||||    
T  8119 agtgcctaaaatatatatcctatttaaatgttttctgacacttatcaa 8072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 226 - 1
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||||||||||| |||||||| ||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  226 tgcctcagctcgccatgaactcgccttgggatcgcc-tggcgagttaaccttttcatttctttgtgttttcttgctttttaagtatccagacatgcattt 128  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaa 200  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  127 tcctacacaaacagttggcattagatgtaaaaagcataaatgaactattcttcaatatttatgagcttttcacgagataacttgtgaaccaagtaatcaa 28  T
Q  201 agtgcctaaaatgtatgtcttatttaa 227  Q
    |||||||||||| ||| || |||||||    
T  27 agtgcctaaaatatatatcctatttaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 28443468 - 28443715
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgacctttt-catttctttgtgttttcttgctttttaagtatccaggcatgcatt 99  Q
    ||||||||||||||||||| | |||||||||||||| | | ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  28443468 tgcctcagctcgccatgaagtcgccttgggctcgcc-tggcgagttgacctttttcatttcttcatgttttcttgctttttaagtatccaggcatgcatt 28443566  T
Q  100 ttcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagc-ttttcactagataacttgcgaaccaagtaatc 198  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  28443567 ttcctacacaaacagttggcattagatgtaaaaagcataattgaatgattcttcaatatttgtgagctttttcactagataacttgcaaaccaagtaatc 28443666  T
Q  199 aaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28443667 aaagtgcctaaaatgtatgtcctatttaactgttttctgacacttatca 28443715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 37522514 - 37522704
Alignment:
Q  57 tttctttgtgttttcttgctttttaagtatccaggcatgcattttcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaat 156  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  37522514 tttcttcgtgttttcttgttttttaagtatccaggtatgcattttcctacacaaacagttggcattagatgtaaaaagcataaatgaatgattcttcaat 37522613  T
Q  157 atttatgagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    |||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37522614 atttgtgcgcttttcactagataacttgcaaactaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 37522704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 41543626 - 41543710
Alignment:
Q  163 gagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||  |||||| |||  || |||||||| |||||||||||||| ||| | ||||||||||  |||||  |||||||||    
T  41543626 gagcttttcatgagataatttgtaaaacaagtaattaaagtgcctaaaatatatatgttatttaactaatttctagcacttatca 41543710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 33034779 - 33035026
Alignment:
Q  1 tgcctcagctcgccatgaacttgccttgggctcgccgttgtgagttgaccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattt 100  Q
    ||||||||||||||||||||| ||||||| |||||| | | || ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33034779 tgcctcagctcgccatgaactcgccttggtctcgcc-tggcgaattgaccttttcatttcttcatgttttcttgctttttaagtatccagacatgcattt 33034877  T
Q  101 tcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagc-ttttcactagataacttgcgaaccaagtaatca 199  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||||||||| || ||||||||||    
T  33034878 tcctacacaaacagttggcattagatgtaaaaagcataattgaatgattcttcaatatttgtgagctttttaactagataacttgcaaatcaagtaatca 33034977  T
Q  200 aagtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaa 248  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33034978 aagtgccaaaaatgtatgtcttatttaactgttttctgacacttatcaa 33035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 44612409 - 44612493
Alignment:
Q  163 gagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||  |||||| |||  || |||||||| |||||||||||||| ||| | ||||||||||  |||||| |||||||||    
T  44612409 gagcttttcatgagataatttgtaaaacaagtaattaaagtgcctaaaatatatatgttatttaactaatttctggcacttatca 44612493  T

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Target: scaffold0202 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 7138 - 7335
Alignment:
Q  49 ccttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattttcctacacaaatagttgacattagatgtaaaaagcataaatgaattat 148  Q
    ||||| ||||||||   |||| ||||||| |||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||    
T  7138 cctttgcatttcttcaagtttccttgcttcttaagtgtcgaggcatgcattttcctacacaaa-agttgacattagatttaaaaagcataaatggatgat 7236  T
Q  149 tcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    |||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| | |  |||||||||||||||||||||||||||    
T  7237 tcttcagtatttgtgagcttttcactggataacttgcaaaccaagtaatcaaagtgtctaaattgtgtattctatttaactgttttctgacacttatca 7335  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 9906106 - 9905903
Alignment:
Q  48 accttttcatttctttgtgttttcttgctttttaagtatccaggcatgcattttcctacacaaatagttgacattagatgtaaaaagcataaatgaatta 147  Q
    |||||| || |||||  ||||| |||||||||||||| |  |||||||||||||||||||||||  ||||  |||||||||||||||||||||||||| |    
T  9906106 acctttgcagttcttcatgtttccttgctttttaagtgtaaaggcatgcattttcctacacaaaaggttggtattagatgtaaaaagcataaatgaataa 9906007  T
Q  148 ttcttcaatatttatgagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||| ||||| | ||||||||||| | ||||||||   || ||||||||||||||| ||||| | ||| |  ||||| |||  ||| ||||||||||||    
T  9906006 ttctttaatatctgtgagcttttcattggataacttataaaacaagtaatcaaagtgtctaaattatatatgatattt-actactttttgacacttatca 9905908  T
Q  248 atggg 252  Q
    |||||    
T  9905907 atggg 9905903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 4973084 - 4973166
Alignment:
Q  165 gcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||| ||||||||||||  || |||||||  |||||||||||||| |||    |||||||||  ||||||||||||||||    
T  4973084 gcttttccctagataacttgtaaaacaagtaacaaaagtgcctaaaatatattgtgtatttaactactttctgacacttatca 4973166  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 43103045 - 43103209
Alignment:
Q  86 tccaggcatgcattttcctacacaaatagttgacattagatgtaaaaagcataaatgaattattcttcaatatttatgagcttttcactagataacttgc 185  Q
    |||| |||||||||||||||| ||||  |||   ||||| | ||||||||||||||  || |||||||| ||||||||||||||||| | |||||||||     
T  43103045 tccaagcatgcattttcctactcaaaaggtttgtattaggtataaaaagcataaattgataattcttcattatttatgagcttttcatttgataacttgt 43103144  T
Q  186 gaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatcaatg 250  Q
     || ||||||||||||||| ||||| | ||| |  |||||||||  ||||||||||| |||||||    
T  43103145 aaaacaagtaatcaaagtgtctaaattatatatgatatttaactactttctgacactcatcaatg 43103209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 40820511 - 40820427
Alignment:
Q  163 gagcttttcactagataacttgcgaaccaagtaatcaaagtgcctaaaatgtatgtcttatttaactgttttctgacacttatca 247  Q
    ||||||||||  |||||| |||  || |||||||| |||||||||||||| ||| | ||||||||||  |||||| |||||||||    
T  40820511 gagcttttcatgagataatttgtaaaacaagtaattaaagtgcctaaaatatatatgttatttaactaatttctggcacttatca 40820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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