View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_high_11 (Length: 350)
Name: NF20376_high_11
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 37291141 - 37291463
Alignment:
| Q |
18 |
aatgggactaatagaagctgttaacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagatt |
117 |
Q |
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| T |
37291141 |
aatgggactaatagaagctgttaacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagatt |
37291240 |
T |
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| Q |
118 |
ctaacgcgcccgagacttctcttccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaa |
217 |
Q |
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| T |
37291241 |
ctaacgcgcccgagacttctcttccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaa |
37291340 |
T |
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| Q |
218 |
gggacggaattcaaaggactattgttgtatctatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttctggtgaagc |
317 |
Q |
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| T |
37291341 |
gggacggaattcaaaggactattgttgtatccatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttctggtgaagc |
37291440 |
T |
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| Q |
318 |
tgtctattttggtccagcctatg |
340 |
Q |
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| T |
37291441 |
tgtctattttggtccagcctatg |
37291463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 311
Target Start/End: Original strand, 37298279 - 37298552
Alignment:
| Q |
38 |
ttaacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttct |
137 |
Q |
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| T |
37298279 |
ttaacacaagggttggagggtatggttccaaaggcctaagcggggggcaaagaaggagactaagcatttgcattgagattctaactcaccctagacttct |
37298378 |
T |
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| Q |
138 |
cttccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggact |
237 |
Q |
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| T |
37298379 |
tttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgttatgagcaggatcgcaagtttaagtctaagggatgatattcaaaggaca |
37298478 |
T |
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| Q |
238 |
attgttgtatctatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttctgg |
311 |
Q |
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| T |
37298479 |
attgttgcatccatacatcagcctagtagtgaagtttttcaactttttgatgacctctgtcttctttcctctgg |
37298552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 308
Target Start/End: Original strand, 37330598 - 37330866
Alignment:
| Q |
40 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
139 |
Q |
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| T |
37330598 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttcttt |
37330697 |
T |
|
| Q |
140 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggactat |
239 |
Q |
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| T |
37330698 |
ttcttgatgagccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgcttccttggacaaaaaggatggaattcaaaggacaat |
37330797 |
T |
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| Q |
240 |
tgttgtatctatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttc |
308 |
Q |
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| T |
37330798 |
tattacatccatccatcaacctagtactgaagtttttcaactctttcataacctttgtcttctgtcttc |
37330866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 308
Target Start/End: Original strand, 37321676 - 37321944
Alignment:
| Q |
40 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
139 |
Q |
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|||||||| ||||||| |||||| ||||| ||||||| || |||| || ||| ||||||||||||| ||||| ||||| || || |||||||| | |
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| T |
37321676 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctat |
37321775 |
T |
|
| Q |
140 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggactat |
239 |
Q |
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| T |
37321776 |
ttcttgatgagccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgctactttggatcataaagatggaattcggaggactat |
37321875 |
T |
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| Q |
240 |
tgttgtatctatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttc |
308 |
Q |
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| T |
37321876 |
tattacatccatccatcaacctagtactgaagtttttcaactttttcataacctatgtcttctgtcttc |
37321944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 312
Target Start/End: Complemental strand, 37346995 - 37346735
Alignment:
| Q |
52 |
ggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctcttccttgatgaac |
151 |
Q |
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| T |
37346995 |
ggagggtggggtgttaaaggaataagtgggggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaac |
37346896 |
T |
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| Q |
152 |
cgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggactattgttgtatctat |
251 |
Q |
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| T |
37346895 |
caactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaat |
37346796 |
T |
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| Q |
252 |
ccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttctggt |
312 |
Q |
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| T |
37346795 |
ccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggt |
37346735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 19544832 - 19544689
Alignment:
| Q |
50 |
ttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctcttccttgatga |
149 |
Q |
| |
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| T |
19544832 |
ttggaggatggggtgttaaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgtccaaaacttctttttcttgatga |
19544733 |
T |
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| Q |
150 |
accgactagcggacttgatagtgcagcttcctactatgttatga |
193 |
Q |
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| T |
19544732 |
accaacaagtggacttgatagtgctgcttcttactatgttatga |
19544689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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