View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20376_high_15 (Length: 317)

Name: NF20376_high_15
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20376_high_15
NF20376_high_15
[»] chr4 (1 HSPs)
chr4 (11-304)||(45998266-45998559)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 45998266 - 45998559
Alignment:
Q  11 cacagagtataaccggttatcactgacgtggcagcaccacagtttgccaactcgaacacaaaaccaccaatgaaaggcacatccgtaaataaccgcaact 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45998266 cacaaagtataaccggttatcactgacgtggcagcaccacagtttgccaactcgaacacaaaaccaccaatgaaaggcatatccgtaaataaccgcaact 45998365  T
Q  111 ccatatccattcttacaaatattcaaactcaaaaccaaccgttttcgctccnnnnnnnccactttcactatctctacttattataataaaacagttacca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  45998366 ccatatccattcttacaaatattcaaactcaaaaccaaccgttttcgctccaaaaaaaccactttcactatctctacttattataataaaacagttacca 45998465  T
Q  211 tttcttttctacgttaccaaaactaatcatttgtctcacacacactaattttgtcttcaacttgaaaatgttccgttttcgtataagcaacacc 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45998466 tttcttctctacgttaccaaaactaatcatttgtctcacacacactaattttgtcttcaacttgaaaatgttccgttttcgtataagcaacacc 45998559  T

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