View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_high_2 (Length: 706)
Name: NF20376_high_2
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 568
Target Start/End: Complemental strand, 36841736 - 36841185
Alignment:
| Q |
16 |
agatggagtagttaacttgtttgttagtgacatatacatggagatga-ggtctggtagatgcaacatggaaagaatttttcaccaccacaaaagtattag |
114 |
Q |
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| T |
36841736 |
agatggagtctttaacttgtttgttagtgacatatacatggagatgaaggtctggtagatgcaacatggaaagaatttttcaccaccacaaaagtattag |
36841637 |
T |
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| Q |
115 |
ctattgaataatgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaataaattgagaccatctcatagtg |
214 |
Q |
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| T |
36841636 |
ctactgaataatgtgtcacaaattgaagtgaaaaattgataagttcttaaaattgatatgacatagtatgactcaaataaattgagaccatctcatagtg |
36841537 |
T |
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| Q |
215 |
ttactgaagatgttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacatagatctccaaaatatttattttt |
314 |
Q |
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| T |
36841536 |
ttactgaagatgttgatattacaacaaaatataataaaatttggccacaattgcagttgtgatgctatctatcacatagatctccaaaatatttattttt |
36841437 |
T |
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| Q |
315 |
gtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataatcaccacactgaaatggccatttatgaagtc |
414 |
Q |
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| T |
36841436 |
gtagaccccaatttaattataatgcaggaactaccaaaacactcccacattaagtgacaataatgataa--accacgctgaaatggccatttatgaagtc |
36841339 |
T |
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| Q |
415 |
aaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaagctttcttgaatttctcttagcc |
514 |
Q |
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| T |
36841338 |
aaaataatgaaagcaaaaatataatatagcatatgaaatttgaaatattctctgctgacaaaacaatgctttttcaagctttcttgaatttctcttagcc |
36841239 |
T |
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| Q |
515 |
tcaagnnnnnnntcaagactaatctacactcattgctcatgaatagggagcagc |
568 |
Q |
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| T |
36841238 |
tcaagaaaaaaatcaagactaatctacactcattgctcatgaatagggagcagc |
36841185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 602 - 700
Target Start/End: Complemental strand, 36841151 - 36841053
Alignment:
| Q |
602 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
700 |
Q |
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| T |
36841151 |
tagtttgaagagacagatacatcttaatactatatactacttgatgaattttcttatcttatttctaaaaaatgggagaagaatatttttactcctttg |
36841053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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