View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_high_20 (Length: 216)
Name: NF20376_high_20
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 29818067 - 29818256
Alignment:
| Q |
13 |
ataattctggatcgattcttcagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcaggaaagaagttggtaatctgaatccagtg |
112 |
Q |
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| T |
29818067 |
ataattcgggatcgattcttcagaaagattacaataacttaggtttaaatatttcaaagaatgtaagctcaggaaagaagttggtaatctgaatccagtg |
29818166 |
T |
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| Q |
113 |
gaagctgattgactcccaaacatccaattgaagggaaaccagttcgttgacattgccggtggcccttggcaaccagcaaatgataatact |
202 |
Q |
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| T |
29818167 |
gaagctgattgacccccaaacatccaattgaagggaaaccagttcgttgacattgccggtggcccttggcaaccagcaaatgataatact |
29818256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 29574079 - 29573891
Alignment:
| Q |
13 |
ataattctggatcgattcttcagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcaggaaagaagttggtaatctgaatccagtg |
112 |
Q |
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| T |
29574079 |
ataattcgggaatgattcttcagaaagattacaataacttaggtttaaatattccaaagaaggtaatcccatgacagaacttggtaatctgaatccattg |
29573980 |
T |
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| Q |
113 |
gaagctgattgactcccaaacatccaattgaagg---gaaaccagttcgttgacattgccggtggcccttggcaaccagcaaatgataa |
198 |
Q |
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| T |
29573979 |
gaagctggttgactcccaaacatcaaattgaagggaagaaaccagttcattgacgttgtcgatggcccttggcaaccagcaaatgataa |
29573891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 29595966 - 29596150
Alignment:
| Q |
21 |
ggatcgattcttcagaaagattacaataacttaggtttaaatacttcaaagaatgtaagctcaggaaagaagttggtaatctgaatccagtggaagctga |
120 |
Q |
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|||| |||||||||||||||||||| ||||||| ||||| ||| |||||||| |||| || | ||||||||| |||||||||||||| |||||| |
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| T |
29595966 |
ggattgattcttcagaaagattacagtaacttaagtttatatatctcaaagaaggtaaattccaaagagaagttggaaatctgaatccagtagaagcttg |
29596065 |
T |
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| Q |
121 |
ttgactcccaaacatccaattgaagg---gaaaccagttcgttgacattgccggtggcccttggcaaccagcaaatgataatact |
202 |
Q |
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| T |
29596066 |
ttgactcccaactatccaattaaagggaagaaaccagttcattgacttggtcaatggccctttggaaccagcaaatgataatact |
29596150 |
T |
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