View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_high_9 (Length: 392)
Name: NF20376_high_9
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 5831995 - 5831620
Alignment:
| Q |
1 |
acctgcagctgcaccttcttctcagtaattttggagagatggtttaaattttccaaaacattaaatttatatattcctatgtttactatagtagaggata |
100 |
Q |
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| T |
5831995 |
acctgcagctgcaccttcttctctgtaattttagagagatggtgtaaattttccaaaacattaaatttatatattcctatgtttactatagtagaggata |
5831896 |
T |
|
| Q |
101 |
tatagagggaaatatattgatattccttgttattgaatttgttttgattaatgtaataatcaagttgagttgggcacgttaatgtttcatttttatgtta |
200 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5831895 |
tatagagggaaatatattaat--tccttgttattgaatttgttttgattaatgtaataatcaagttgagttgggcatgttaatgtttcatttttatgtta |
5831798 |
T |
|
| Q |
201 |
tgtactatttcatgttctccaattatcaaattttggaattgtttcttctcttggtattacatttgatatctacagtgaattttgtctcaataagaaaagt |
300 |
Q |
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| T |
5831797 |
tgtactatttcatgttctccaattatcaaattttggaattgtttcttctcttggtatcacatttgatatctacagtgaattttgtctcaataagaaaagt |
5831698 |
T |
|
| Q |
301 |
tacttgttatactttct----ggtgtatattcactctttggttctgcttttttgctctatttaatacaaaagggttcat |
375 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
5831697 |
tacttgttatactttctggtgggtgtatattcactctttggttctg-ttttttattctatttaatacaaaagggttcat |
5831620 |
T |
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