View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_1 (Length: 790)
Name: NF20376_low_1
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 4e-65; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 630 - 772
Target Start/End: Original strand, 21153251 - 21153393
Alignment:
| Q |
630 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
729 |
Q |
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| T |
21153251 |
taaatttcacttacatatctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21153350 |
T |
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| Q |
730 |
tcacacgttgaattgaaaccttgtaatgaaacaatgagttaga |
772 |
Q |
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| T |
21153351 |
tcacatgttgaattgaaactttgtaatgaaacaatgagttaga |
21153393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 630 - 772
Target Start/End: Original strand, 21164192 - 21164333
Alignment:
| Q |
630 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
729 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21164192 |
taaatttcacttacatatctaacattgact-gaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21164290 |
T |
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| Q |
730 |
tcacacgttgaattgaaaccttgtaatgaaacaatgagttaga |
772 |
Q |
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| T |
21164291 |
tcacacgttgaattgaaaccttgtaatgagacaatgagttaga |
21164333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 630 - 772
Target Start/End: Original strand, 21160386 - 21160528
Alignment:
| Q |
630 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
729 |
Q |
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| T |
21160386 |
taaatttcacttacatttctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21160485 |
T |
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| Q |
730 |
tcacacgttgaattgaaaccttgtaatgaaacaatgagttaga |
772 |
Q |
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| T |
21160486 |
tcacatgttgaattgaaactttgtaatgaaacaatgaattaga |
21160528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 21153156 - 21153254
Alignment:
| Q |
15 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
113 |
Q |
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| T |
21153156 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21153254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 21160291 - 21160389
Alignment:
| Q |
15 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
113 |
Q |
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| T |
21160291 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21160389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 21164097 - 21164195
Alignment:
| Q |
15 |
aatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
113 |
Q |
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| T |
21164097 |
aatattaggaggagcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataataaa |
21164195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
31 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
130 |
Q |
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| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
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| Q |
131 |
tacaat |
136 |
Q |
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||||| |
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| T |
2717928 |
aacaat |
2717933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
229 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
274 |
Q |
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| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
128 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
194 |
Q |
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||||||||||| |||| | |||||||| || ||||||||| ||||||||||| ||||||||||||| |
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| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
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