View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20376_low_12 (Length: 340)
Name: NF20376_low_12
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 41378967 - 41378628
Alignment:
| Q |
1 |
tatgtttttctcatatctctttaaaactttatattgttttgaaggactatgtaattttttcatattaaattatttaagataaaatattggtctcattaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41378967 |
tatgtttttctcatatctctttaaaactttatattgaattgaaggactatgtaattttttcatattaaattatttaagataaaatgttggtctcattaga |
41378868 |
T |
|
| Q |
101 |
aagtttcccccttgtttcttcttgaccaaatcttacggtacttggaggctggcaatctataaaaaccatagaacgtgtactaaatatttcgacaatcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41378867 |
aagtttcccccttgtttcttcttgaccaaatcttacggtacttggaggctagcaatctataaaaaccatagaacgtgtactaaatatttcgacaatcaca |
41378768 |
T |
|
| Q |
201 |
tttcatcatatccaaaagctaatattccactgaagttctataaacaaaaaacaatctttgaatctcaaacatgaaccgccaaaaccactttttgttttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41378767 |
tttcatcatatccaaaagctaatattccactgaagttctataaacaaaaatcaatctttgaatctcaaacatgaaccgccaaaaccactttttgttttca |
41378668 |
T |
|
| Q |
301 |
attgtgttattatcaataaccatcctattttcttcgacat |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41378667 |
attgtgttattatcaataaccatcctattttattcgacat |
41378628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University